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| Mutant Information |
|---|
| Mutant Name | FN755-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN755-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4261522 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 4261523 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 11452694 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 32863596 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g334100 |
| SBS | Chr1 | 36657673 | C-A | Homo | INTRON | |
| SBS | Chr1 | 40943638 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 619060 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 17865837 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g178500 |
| SBS | Chr2 | 23984619 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24275601 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 14574021 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 20228109 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5576408 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 9683590 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 15944594 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 6301437 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18293594 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4538166 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 5454383 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 9403028 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7791962 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g043900 |
| SBS | Chr9 | 11305226 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 9827620 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 8246583 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 8509578 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 23501975 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7765995 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7765996 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23519676 | A-G | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1338106 | 1338107 | 1 | |
| Deletion | Chr7 | 7017564 | 7017572 | 8 | |
| Deletion | Chr6 | 7947904 | 7947910 | 6 | |
| Deletion | Chr2 | 8536608 | 8536611 | 3 | OsKitaake02g108500 |
| Deletion | Chr5 | 10090048 | 10090054 | 6 | |
| Deletion | Chr5 | 15234834 | 15234837 | 3 | |
| Deletion | Chr5 | 15429295 | 15429297 | 2 | |
| Deletion | Chr10 | 16378193 | 16378246 | 53 | |
| Deletion | Chr12 | 17846402 | 17846407 | 5 | |
| Deletion | Chr4 | 19564254 | 19564260 | 6 | |
| Deletion | Chr2 | 20631080 | 20631082 | 2 | |
| Deletion | Chr8 | 24824288 | 24824290 | 2 | |
| Deletion | Chr2 | 30592201 | 30592202 | 1 | OsKitaake02g312700 |
| Deletion | Chr1 | 33568625 | 33568627 | 2 | |
| Deletion | Chr1 | 38578106 | 38578107 | 1 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 24603759 | 24603763 | 3 | OsKitaake01g237700  |
| Insertion | Chr5 | 10505164 | 10505166 | 1 | |
| Insertion | Chr8 | 28603862 | 28603865 | 2 | |
| Insertion | Chr1 | 14631562 | 14631614 | 51 | |
| Insertion | Chr5 | 15513322 | 15513324 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 3542006 | 3665651 | 2 |
| Inversion | Chr8 | 3691338 | 3694750 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 3665662 | Chr3 | 33550890 | 2 |
| Translocation | Chr8 | 3691331 | Chr3 | 33550886 | OsKitaake03g359500 |