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| Mutant Information |
|---|
| Mutant Name | FN756-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN756-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 35229697 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 35229698 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 50205 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 21866004 | T-A | Homo | INTRON | |
| SBS | Chr2 | 29497985 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 21078199 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 27613734 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 35361337 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1788359 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9885052 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 10176125 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22862367 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15609401 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22019070 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g179600 |
| SBS | Chr5 | 30166877 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 11291989 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 22088765 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24503293 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1664822 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g023200 |
| SBS | Chr7 | 3855823 | A-C | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 5499778 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 4114172 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4114173 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11663901 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17336662 | A-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4001072 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7060859 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9403959 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23832353 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11494921 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11623192 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 12985541 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21636826 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 29234138 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 9467522 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9467527 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 13774229 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19871484 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2074029 | 2074030 | 1 | |
| Deletion | Chr10 | 5286321 | 5286689 | 368 | OsKitaake10g037801 |
| Deletion | Chr12 | 6050483 | 6050484 | 1 | |
| Deletion | Chr4 | 10828068 | 10828074 | 6 | |
| Deletion | Chr4 | 13088028 | 13088152 | 124 | |
| Deletion | Chr2 | 16102492 | 16102499 | 7 | |
| Deletion | Chr4 | 20538751 | 20538753 | 2 | |
| Deletion | Chr12 | 21358274 | 21358490 | 216 | |
| Deletion | Chr3 | 21439164 | 21439283 | 119 | |
| Deletion | Chr7 | 25934535 | 25934536 | 1 | |
| Deletion | Chr2 | 26485805 | 26485825 | 20 | |
| Deletion | Chr11 | 26659983 | 26660376 | 393 | |
| Deletion | Chr2 | 30552637 | 30552708 | 71 | |
| Deletion | Chr1 | 32287862 | 32287880 | 18 | |
| Deletion | Chr1 | 35188489 | 35188495 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 30231639 | 30231641 | 1 | |
| Insertion | Chr6 | 15745022 | 15745025 | 2 | |
| Insertion | Chr8 | 6209725 | 6209727 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 10754274 | 11501276 | |
| Inversion | Chr2 | 10754276 | 11501282 | |
| Inversion | Chr6 | 13608731 | 13637118 | OsKitaake06g142800 |
| Inversion | Chr6 | 13608736 | 13637119 | OsKitaake06g142800 |