Search Kitaake

Mutant Information

Mutant Name	FN758-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN758-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32687027 T-C Hetero INTRON
SBS Chr1 42902399 G-A Homo INTERGENIC
SBS Chr3 9473146 A-G Hetero INTERGENIC
SBS Chr3 9966839 C-T Hetero INTERGENIC
SBS Chr3 20502338 C-T Hetero INTERGENIC
SBS Chr3 22707061 G-A Hetero INTERGENIC
SBS Chr4 5399460 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g026300
SBS Chr4 15068207 C-T Homo INTERGENIC
SBS Chr4 15068225 C-G Homo INTERGENIC
SBS Chr4 21205700 C-A Hetero INTERGENIC
SBS Chr4 29486704 A-T Hetero INTERGENIC
SBS Chr5 16725065 T-A Homo INTERGENIC
SBS Chr6 285823 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g002000
SBS Chr6 17773240 T-C Hetero INTERGENIC
SBS Chr6 23993391 G-T Homo INTERGENIC
SBS Chr6 27410257 C-A Hetero INTERGENIC
SBS Chr6 28937428 C-T Hetero INTERGENIC
SBS Chr6 29340204 T-A Hetero INTERGENIC
SBS Chr7 1697374 C-T Hetero INTERGENIC
SBS Chr7 9298667 A-T Hetero INTERGENIC
SBS Chr7 9952631 C-T Hetero INTERGENIC
SBS Chr8 14234639 C-A Homo INTERGENIC
SBS Chr9 5539023 T-A Homo INTERGENIC
SBS Chr9 8671726 A-G Hetero INTERGENIC
SBS Chr10 6866296 C-T Hetero INTERGENIC
SBS Chr10 7233665 C-T Hetero INTERGENIC
SBS Chr10 15920247 A-T Hetero INTERGENIC
SBS Chr11 17732667 G-C Hetero INTERGENIC
SBS Chr11 23939818 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3713372 3713375 3
Deletion Chr3 5118093 5118344 251
Deletion Chr9 5716447 5716538 91
Deletion Chr12 5876612 5876614 2
Deletion Chr12 6117453 6117455 2
Deletion Chr2 6232500 6232507 7
Deletion Chr7 8259425 8259469 44
Deletion Chr11 16691001 16717000 25999 3
Deletion Chr3 17358936 17359015 79
Deletion Chr2 20691705 20691789 84
Deletion Chr1 38152001 38161000 8999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21495425 21495433 7
Insertion Chr5 11224004 11224006 1
Insertion Chr5 11929946 11929948 1
Insertion Chr6 20796 20798 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6406012 7168459
Inversion Chr12 23570835 24171958
Inversion Chr12 23570841 24171960

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 20623460 Chr2 25288886

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32687027	T-C	Hetero	INTRON
SBS	Chr1	42902399	G-A	Homo	INTERGENIC
SBS	Chr3	9473146	A-G	Hetero	INTERGENIC
SBS	Chr3	9966839	C-T	Hetero	INTERGENIC
SBS	Chr3	20502338	C-T	Hetero	INTERGENIC
SBS	Chr3	22707061	G-A	Hetero	INTERGENIC
SBS	Chr4	5399460	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g026300
SBS	Chr4	15068207	C-T	Homo	INTERGENIC
SBS	Chr4	15068225	C-G	Homo	INTERGENIC
SBS	Chr4	21205700	C-A	Hetero	INTERGENIC
SBS	Chr4	29486704	A-T	Hetero	INTERGENIC
SBS	Chr5	16725065	T-A	Homo	INTERGENIC
SBS	Chr6	285823	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g002000
SBS	Chr6	17773240	T-C	Hetero	INTERGENIC
SBS	Chr6	23993391	G-T	Homo	INTERGENIC
SBS	Chr6	27410257	C-A	Hetero	INTERGENIC
SBS	Chr6	28937428	C-T	Hetero	INTERGENIC
SBS	Chr6	29340204	T-A	Hetero	INTERGENIC
SBS	Chr7	1697374	C-T	Hetero	INTERGENIC
SBS	Chr7	9298667	A-T	Hetero	INTERGENIC
SBS	Chr7	9952631	C-T	Hetero	INTERGENIC
SBS	Chr8	14234639	C-A	Homo	INTERGENIC
SBS	Chr9	5539023	T-A	Homo	INTERGENIC
SBS	Chr9	8671726	A-G	Hetero	INTERGENIC
SBS	Chr10	6866296	C-T	Hetero	INTERGENIC
SBS	Chr10	7233665	C-T	Hetero	INTERGENIC
SBS	Chr10	15920247	A-T	Hetero	INTERGENIC
SBS	Chr11	17732667	G-C	Hetero	INTERGENIC
SBS	Chr11	23939818	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3713372	3713375	3
Deletion	Chr3	5118093	5118344	251
Deletion	Chr9	5716447	5716538	91
Deletion	Chr12	5876612	5876614	2
Deletion	Chr12	6117453	6117455	2
Deletion	Chr2	6232500	6232507	7
Deletion	Chr7	8259425	8259469	44
Deletion	Chr11	16691001	16717000	25999	3
Deletion	Chr3	17358936	17359015	79
Deletion	Chr2	20691705	20691789	84
Deletion	Chr1	38152001	38161000	8999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6406012	7168459
Inversion	Chr12	23570835	24171958
Inversion	Chr12	23570841	24171960

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes