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| Mutant Information |
|---|
| Mutant Name | FN759-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN759-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18854526 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 18854528 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 22116788 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 22942663 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24641050 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 25478052 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 26896976 | C-G | Hetero | STOP_GAINED | OsKitaake01g261600 |
| SBS | Chr1 | 34634445 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 3384511 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g048900 |
| SBS | Chr2 | 13503342 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27825502 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28361944 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 3618286 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 4237962 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 9514558 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23372764 | A-T | Homo | INTRON | |
| SBS | Chr4 | 23372765 | T-A | Homo | INTRON | |
| SBS | Chr4 | 29359536 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33427657 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g274600 |
| SBS | Chr5 | 15749102 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g121300 |
| SBS | Chr5 | 20620729 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6976534 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8369733 | T-C | Homo | INTRON | |
| SBS | Chr7 | 13767947 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12016353 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19433138 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 6947020 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g039700 |
| SBS | Chr10 | 8886446 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12186628 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 3048935 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 3048936 | A-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 4197785 | 4197786 | 1 | OsKitaake07g053000 |
| Deletion | Chr9 | 5286785 | 5286791 | 6 | |
| Deletion | Chr11 | 12244359 | 12244362 | 3 | |
| Deletion | Chr10 | 14687001 | 14926000 | 238999 | 12 |
| Deletion | Chr6 | 15655055 | 15655056 | 1 | OsKitaake06g152800 |
| Deletion | Chr7 | 21820916 | 21820918 | 2 | |
| Deletion | Chr2 | 23205845 | 23205941 | 96 | |
| Deletion | Chr3 | 28682487 | 28682488 | 1 | |
| Deletion | Chr6 | 30546972 | 30546973 | 1 | OsKitaake06g287600 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 25051866 | 25051869 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 2813877 | 2848532 | |
| Inversion | Chr11 | 2813888 | 2848534 | |
| Inversion | Chr10 | 15588635 | 16195986 | |
| Inversion | Chr10 | 15588644 | 16196009 | |
| Inversion | Chr10 | 16214374 | 16373680 | OsKitaake10g110500 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 14926085 | Chr3 | 6358291 | |
| Translocation | Chr10 | 14934428 | Chr3 | 6358289 | OsKitaake10g093300 |