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Mutant Information

Mutant Name	FN760-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN760-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11544478 A-G Homo INTERGENIC
SBS Chr1 15735750 C-A Homo INTERGENIC
SBS Chr1 25058490 G-A Hetero INTERGENIC
SBS Chr1 31802760 G-C Homo INTERGENIC
SBS Chr1 32498620 A-G Homo INTERGENIC
SBS Chr1 41971817 T-C Homo START_GAINED
SBS Chr2 121732 A-T Homo INTERGENIC
SBS Chr2 14806148 C-G Hetero INTERGENIC
SBS Chr2 25203491 G-A Homo INTERGENIC
SBS Chr3 3299783 T-C Hetero UTR_3_PRIME
SBS Chr3 11050536 A-G Hetero INTRON
SBS Chr3 12263986 T-G Homo INTERGENIC
SBS Chr3 18469562 G-A Homo INTERGENIC
SBS Chr4 797754 G-T Hetero INTERGENIC
SBS Chr4 3571905 C-T Hetero INTERGENIC
SBS Chr4 4186717 T-C Hetero INTERGENIC
SBS Chr4 14187344 G-A Homo UTR_3_PRIME
SBS Chr4 24151298 G-A Hetero INTRON
SBS Chr4 34076351 C-T Hetero INTERGENIC
SBS Chr5 109298 A-G Hetero INTRON
SBS Chr5 8092649 G-A Homo INTERGENIC
SBS Chr5 8092650 T-A Homo INTERGENIC
SBS Chr5 8402449 A-T Homo INTERGENIC
SBS Chr6 5195392 A-T Homo UTR_3_PRIME
SBS Chr7 2045385 T-G Hetero INTERGENIC
SBS Chr7 10128953 A-C Homo INTRON
SBS Chr8 19187593 G-A Homo INTERGENIC
SBS Chr8 20055531 C-T Homo INTERGENIC
SBS Chr9 12316072 T-C Hetero INTERGENIC
SBS Chr10 6754233 C-T Hetero INTERGENIC
SBS Chr10 8728380 C-T Hetero INTERGENIC
SBS Chr10 12371603 C-T Hetero INTERGENIC
SBS Chr10 21614996 C-T Hetero INTERGENIC
SBS Chr11 8764692 T-G Hetero INTERGENIC
SBS Chr11 14642510 A-T Hetero INTERGENIC
SBS Chr11 20132551 A-T Hetero INTERGENIC
SBS Chr11 20386682 A-T Hetero INTERGENIC
SBS Chr11 20406667 C-A Hetero INTERGENIC
SBS Chr11 26686513 G-A Hetero INTERGENIC
SBS Chr12 13021 A-G Hetero INTRON
SBS Chr12 11608769 C-T Hetero INTERGENIC
SBS Chr12 16409517 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g124600

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3032224 3032390 166 OsKitaake05g035600
Deletion Chr7 3075334 3075336 2 OsKitaake07g038600
Deletion Chr2 9532150 9532152 2
Deletion Chr10 9708544 9708623 79
Deletion Chr11 10739196 10739207 11
Deletion Chr8 10787850 10787942 92
Deletion Chr11 10958178 10958180 2
Deletion Chr4 12624182 12624385 203
Deletion Chr12 15184513 15184516 3
Deletion Chr9 16941892 16941894 2
Deletion Chr11 17702001 17713000 10999 2
Deletion Chr8 18753135 18753147 12
Deletion Chr4 18758178 18758301 123
Deletion Chr3 25057419 25057425 6
Deletion Chr2 31209001 31213000 3999
Deletion Chr2 32873193 32873196 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16372008 16372011 2
Insertion Chr12 17238951 17238954 2
Insertion Chr5 16412157 16412161 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 5162109 5394139 OsKitaake08g058600
Inversion Chr6 15265826 15586627
Inversion Chr6 15265845 15586636
Inversion Chr3 25851909 25981698
Inversion Chr3 25851935 25981701

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7363637 Chr1 7224563
Translocation Chr11 7363859 Chr1 7224559

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11544478	A-G	Homo	INTERGENIC
SBS	Chr1	15735750	C-A	Homo	INTERGENIC
SBS	Chr1	25058490	G-A	Hetero	INTERGENIC
SBS	Chr1	31802760	G-C	Homo	INTERGENIC
SBS	Chr1	32498620	A-G	Homo	INTERGENIC
SBS	Chr1	41971817	T-C	Homo	START_GAINED
SBS	Chr2	121732	A-T	Homo	INTERGENIC
SBS	Chr2	14806148	C-G	Hetero	INTERGENIC
SBS	Chr2	25203491	G-A	Homo	INTERGENIC
SBS	Chr3	3299783	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	11050536	A-G	Hetero	INTRON
SBS	Chr3	12263986	T-G	Homo	INTERGENIC
SBS	Chr3	18469562	G-A	Homo	INTERGENIC
SBS	Chr4	797754	G-T	Hetero	INTERGENIC
SBS	Chr4	3571905	C-T	Hetero	INTERGENIC
SBS	Chr4	4186717	T-C	Hetero	INTERGENIC
SBS	Chr4	14187344	G-A	Homo	UTR_3_PRIME
SBS	Chr4	24151298	G-A	Hetero	INTRON
SBS	Chr4	34076351	C-T	Hetero	INTERGENIC
SBS	Chr5	109298	A-G	Hetero	INTRON
SBS	Chr5	8092649	G-A	Homo	INTERGENIC
SBS	Chr5	8092650	T-A	Homo	INTERGENIC
SBS	Chr5	8402449	A-T	Homo	INTERGENIC
SBS	Chr6	5195392	A-T	Homo	UTR_3_PRIME
SBS	Chr7	2045385	T-G	Hetero	INTERGENIC
SBS	Chr7	10128953	A-C	Homo	INTRON
SBS	Chr8	19187593	G-A	Homo	INTERGENIC
SBS	Chr8	20055531	C-T	Homo	INTERGENIC
SBS	Chr9	12316072	T-C	Hetero	INTERGENIC
SBS	Chr10	6754233	C-T	Hetero	INTERGENIC
SBS	Chr10	8728380	C-T	Hetero	INTERGENIC
SBS	Chr10	12371603	C-T	Hetero	INTERGENIC
SBS	Chr10	21614996	C-T	Hetero	INTERGENIC
SBS	Chr11	8764692	T-G	Hetero	INTERGENIC
SBS	Chr11	14642510	A-T	Hetero	INTERGENIC
SBS	Chr11	20132551	A-T	Hetero	INTERGENIC
SBS	Chr11	20386682	A-T	Hetero	INTERGENIC
SBS	Chr11	20406667	C-A	Hetero	INTERGENIC
SBS	Chr11	26686513	G-A	Hetero	INTERGENIC
SBS	Chr12	13021	A-G	Hetero	INTRON
SBS	Chr12	11608769	C-T	Hetero	INTERGENIC
SBS	Chr12	16409517	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g124600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3032224	3032390	166	OsKitaake05g035600
Deletion	Chr7	3075334	3075336	2	OsKitaake07g038600
Deletion	Chr2	9532150	9532152	2
Deletion	Chr10	9708544	9708623	79
Deletion	Chr11	10739196	10739207	11
Deletion	Chr8	10787850	10787942	92
Deletion	Chr11	10958178	10958180	2
Deletion	Chr4	12624182	12624385	203
Deletion	Chr12	15184513	15184516	3
Deletion	Chr9	16941892	16941894	2
Deletion	Chr11	17702001	17713000	10999	2
Deletion	Chr8	18753135	18753147	12
Deletion	Chr4	18758178	18758301	123
Deletion	Chr3	25057419	25057425	6
Deletion	Chr2	31209001	31213000	3999
Deletion	Chr2	32873193	32873196	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5162109	5394139	OsKitaake08g058600
Inversion	Chr6	15265826	15586627
Inversion	Chr6	15265845	15586636
Inversion	Chr3	25851909	25981698
Inversion	Chr3	25851935	25981701

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes