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| Mutant Information |
|---|
| Mutant Name | FN761-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN761-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5370723 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20790819 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 24440572 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 25289831 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 34552958 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 2773590 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g039000 |
| SBS | Chr3 | 31036145 | G-C | Hetero | INTRON | |
| SBS | Chr5 | 646483 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 1105270 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9727952 | T-A | Homo | STOP_GAINED | OsKitaake06g113901 |
| SBS | Chr6 | 19019962 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 30291830 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 5632391 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13144004 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 14439363 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15406563 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 19994177 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 19372373 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22606508 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 5329398 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 16591501 | G-C | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1362737 | 1362738 | 1 | |
| Deletion | Chr2 | 4651154 | 4651155 | 1 | OsKitaake02g064300 |
| Deletion | Chr5 | 13969641 | 13969642 | 1 | OsKitaake05g108000 |
| Deletion | Chr9 | 14366625 | 14366715 | 90 | |
| Deletion | Chr12 | 17170947 | 17170948 | 1 | OsKitaake12g126600 |
| Deletion | Chr11 | 20138634 | 20138731 | 97 | |
| Deletion | Chr1 | 29094452 | 29094519 | 67 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 39850707 | 39850709 | 1 | OsKitaake01g431100  |
| Insertion | Chr2 | 13778278 | 13778280 | 1 | |
| Insertion | Chr3 | 16744382 | 16744384 | 1 | |
| Insertion | Chr7 | 14345184 | 14345186 | 1 | |
| Insertion | Chr7 | 25814017 | 25814019 | 1 | |
| Insertion | Chr12 | 14779926 | 14779928 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 14141461 | 14431840 | OsKitaake08g111300 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 18466012 | Chr2 | 34217682 | |
| Translocation | Chr6 | 18467315 | Chr2 | 34217691 |