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Mutant Information

Mutant Name	FN762-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN762-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1429236 G-C Hetero UTR_3_PRIME
SBS Chr1 7154497 C-T Hetero INTRON
SBS Chr1 10907940 C-T Hetero INTERGENIC
SBS Chr1 25974120 A-G Hetero INTERGENIC
SBS Chr1 40339264 G-T Homo INTERGENIC
SBS Chr2 1387315 C-T Hetero INTERGENIC
SBS Chr2 6629182 C-T Hetero UTR_3_PRIME
SBS Chr2 21511674 C-G Homo INTERGENIC
SBS Chr2 24498819 T-A Homo INTERGENIC
SBS Chr2 31033518 C-T Homo INTERGENIC
SBS Chr3 5748576 G-T Hetero INTRON
SBS Chr3 11610158 A-T Homo INTERGENIC
SBS Chr3 15089805 A-C Hetero INTERGENIC
SBS Chr3 24721952 T-C Hetero INTERGENIC
SBS Chr3 36722525 G-C Hetero UTR_3_PRIME
SBS Chr4 3656796 T-C Homo INTRON
SBS Chr4 9758251 T-A Hetero INTERGENIC
SBS Chr4 12771407 C-T Hetero INTRON
SBS Chr5 24384478 A-T Hetero INTERGENIC
SBS Chr6 2356612 G-A Hetero INTERGENIC
SBS Chr6 5105510 C-A Hetero INTERGENIC
SBS Chr6 15114896 T-C Hetero INTERGENIC
SBS Chr6 17372961 G-T Homo INTRON
SBS Chr6 30848627 G-T Hetero INTRON
SBS Chr7 18901406 A-C Homo INTERGENIC
SBS Chr7 19937318 C-A Hetero INTERGENIC
SBS Chr8 18294288 A-G Homo INTERGENIC
SBS Chr9 7531425 T-C Homo INTERGENIC
SBS Chr9 15237951 G-A Hetero INTERGENIC
SBS Chr10 6671914 T-C Hetero INTERGENIC
SBS Chr10 15936540 T-G Homo INTERGENIC
SBS Chr11 3529246 T-C Hetero INTERGENIC
SBS Chr11 7304956 G-T Hetero INTERGENIC
SBS Chr11 7304958 C-T Hetero INTERGENIC
SBS Chr11 10695424 G-A Hetero INTRON
SBS Chr11 10695425 G-A Hetero INTRON
SBS Chr11 14119457 C-T Hetero INTERGENIC
SBS Chr11 14692925 G-C Hetero INTERGENIC
SBS Chr11 15518572 G-A Hetero INTERGENIC
SBS Chr11 15959747 T-G Hetero INTERGENIC
SBS Chr11 16865923 C-G Homo INTERGENIC
SBS Chr11 20367966 C-T Hetero INTERGENIC
SBS Chr11 20998419 T-C Hetero INTERGENIC
SBS Chr12 4294502 T-C Hetero INTRON
SBS Chr12 11115886 A-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2466313 2466315 2
Deletion Chr1 3208001 3285000 76999 13
Deletion Chr8 4735928 4736100 172
Deletion Chr11 5532166 5532210 44
Deletion Chr7 6182499 6182500 1
Deletion Chr7 7433218 7433220 2
Deletion Chr10 10947001 10955000 7999 2
Deletion Chr8 12715827 12715829 2
Deletion Chr8 13588815 13588818 3
Deletion Chr6 17543001 17739000 195999 11
Deletion Chr6 18310785 18310789 4
Deletion Chr8 20549870 20549872 2
Deletion Chr1 21395941 21396123 182
Deletion Chr2 26146824 26146825 1
Deletion Chr1 27544512 27544514 2
Deletion Chr7 28437402 28437409 7
Deletion Chr2 28908067 28908071 4 OsKitaake02g290600
Deletion Chr4 30172806 30172811 5
Deletion Chr6 30902691 30902693 2 OsKitaake06g292600

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 17454081 18349257 OsKitaake11g136500
Inversion Chr11 17454088 18078689 OsKitaake11g136500
Inversion Chr6 17539866 18154423
Inversion Chr6 17735576 18154429
Inversion Chr11 18354643 19144651 OsKitaake11g148700

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2882973 Chr6 11272156 OsKitaake06g124700
Translocation Chr10 6708245 Chr1 13937583 OsKitaake10g045700
Translocation Chr10 6708605 Chr1 13937580 OsKitaake10g045700
Translocation Chr7 15933313 Chr4 23390079 OsKitaake04g144300
Translocation Chr7 15933314 Chr4 23389692 OsKitaake04g144300
Translocation Chr2 36592446 Chr1 3284675 OsKitaake02g389200
Translocation Chr2 36597494 Chr1 3207560 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1429236	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	7154497	C-T	Hetero	INTRON
SBS	Chr1	10907940	C-T	Hetero	INTERGENIC
SBS	Chr1	25974120	A-G	Hetero	INTERGENIC
SBS	Chr1	40339264	G-T	Homo	INTERGENIC
SBS	Chr2	1387315	C-T	Hetero	INTERGENIC
SBS	Chr2	6629182	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	21511674	C-G	Homo	INTERGENIC
SBS	Chr2	24498819	T-A	Homo	INTERGENIC
SBS	Chr2	31033518	C-T	Homo	INTERGENIC
SBS	Chr3	5748576	G-T	Hetero	INTRON
SBS	Chr3	11610158	A-T	Homo	INTERGENIC
SBS	Chr3	15089805	A-C	Hetero	INTERGENIC
SBS	Chr3	24721952	T-C	Hetero	INTERGENIC
SBS	Chr3	36722525	G-C	Hetero	UTR_3_PRIME
SBS	Chr4	3656796	T-C	Homo	INTRON
SBS	Chr4	9758251	T-A	Hetero	INTERGENIC
SBS	Chr4	12771407	C-T	Hetero	INTRON
SBS	Chr5	24384478	A-T	Hetero	INTERGENIC
SBS	Chr6	2356612	G-A	Hetero	INTERGENIC
SBS	Chr6	5105510	C-A	Hetero	INTERGENIC
SBS	Chr6	15114896	T-C	Hetero	INTERGENIC
SBS	Chr6	17372961	G-T	Homo	INTRON
SBS	Chr6	30848627	G-T	Hetero	INTRON
SBS	Chr7	18901406	A-C	Homo	INTERGENIC
SBS	Chr7	19937318	C-A	Hetero	INTERGENIC
SBS	Chr8	18294288	A-G	Homo	INTERGENIC
SBS	Chr9	7531425	T-C	Homo	INTERGENIC
SBS	Chr9	15237951	G-A	Hetero	INTERGENIC
SBS	Chr10	6671914	T-C	Hetero	INTERGENIC
SBS	Chr10	15936540	T-G	Homo	INTERGENIC
SBS	Chr11	3529246	T-C	Hetero	INTERGENIC
SBS	Chr11	7304956	G-T	Hetero	INTERGENIC
SBS	Chr11	7304958	C-T	Hetero	INTERGENIC
SBS	Chr11	10695424	G-A	Hetero	INTRON
SBS	Chr11	10695425	G-A	Hetero	INTRON
SBS	Chr11	14119457	C-T	Hetero	INTERGENIC
SBS	Chr11	14692925	G-C	Hetero	INTERGENIC
SBS	Chr11	15518572	G-A	Hetero	INTERGENIC
SBS	Chr11	15959747	T-G	Hetero	INTERGENIC
SBS	Chr11	16865923	C-G	Homo	INTERGENIC
SBS	Chr11	20367966	C-T	Hetero	INTERGENIC
SBS	Chr11	20998419	T-C	Hetero	INTERGENIC
SBS	Chr12	4294502	T-C	Hetero	INTRON
SBS	Chr12	11115886	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2466313	2466315	2
Deletion	Chr1	3208001	3285000	76999	13
Deletion	Chr8	4735928	4736100	172
Deletion	Chr11	5532166	5532210	44
Deletion	Chr7	6182499	6182500	1
Deletion	Chr7	7433218	7433220	2
Deletion	Chr10	10947001	10955000	7999	2
Deletion	Chr8	12715827	12715829	2
Deletion	Chr8	13588815	13588818	3
Deletion	Chr6	17543001	17739000	195999	11
Deletion	Chr6	18310785	18310789	4
Deletion	Chr8	20549870	20549872	2
Deletion	Chr1	21395941	21396123	182
Deletion	Chr2	26146824	26146825	1
Deletion	Chr1	27544512	27544514	2
Deletion	Chr7	28437402	28437409	7
Deletion	Chr2	28908067	28908071	4	OsKitaake02g290600
Deletion	Chr4	30172806	30172811	5
Deletion	Chr6	30902691	30902693	2	OsKitaake06g292600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17454081	18349257	OsKitaake11g136500
Inversion	Chr11	17454088	18078689	OsKitaake11g136500
Inversion	Chr6	17539866	18154423
Inversion	Chr6	17735576	18154429
Inversion	Chr11	18354643	19144651	OsKitaake11g148700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes