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Mutant Information

Mutant Name	FN764-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN764-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2300011 G-A Hetero INTERGENIC
SBS Chr1 5964990 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g076300
SBS Chr1 6007855 C-A Hetero INTRON
SBS Chr1 23934015 C-A Hetero INTERGENIC
SBS Chr1 24055220 C-A Hetero INTRON
SBS Chr2 26276788 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g261450
SBS Chr3 16353032 C-T Homo INTERGENIC
SBS Chr3 21709310 G-T Homo INTERGENIC
SBS Chr3 30084677 A-G Homo INTERGENIC
SBS Chr4 11744121 C-T Homo INTERGENIC
SBS Chr4 13605964 A-T Hetero INTERGENIC
SBS Chr4 14594518 C-A Homo INTERGENIC
SBS Chr4 29875346 G-A Hetero INTRON
SBS Chr4 36161437 G-A Hetero INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 4987541 T-A Hetero INTERGENIC
SBS Chr5 7495827 A-T Hetero INTRON
SBS Chr6 4181148 T-C Hetero INTERGENIC
SBS Chr6 13918186 C-T Hetero INTERGENIC
SBS Chr7 221896 G-A Hetero INTERGENIC
SBS Chr7 10020921 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g098900
SBS Chr7 12771159 C-A Hetero INTERGENIC
SBS Chr7 15970593 C-T Hetero INTERGENIC
SBS Chr8 545459 G-A Hetero INTERGENIC
SBS Chr8 7864986 A-G Homo INTERGENIC
SBS Chr8 23194815 T-C Homo INTERGENIC
SBS Chr8 24196082 A-G Homo INTRON
SBS Chr9 6119250 C-T Hetero INTERGENIC
SBS Chr9 9393824 C-T Hetero INTERGENIC
SBS Chr9 13780139 G-A Hetero INTERGENIC
SBS Chr9 20182287 G-A Hetero INTERGENIC
SBS Chr9 21369589 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g184850
SBS Chr10 9845326 G-C Hetero INTERGENIC
SBS Chr10 15678675 C-A Homo INTERGENIC
SBS Chr10 18196192 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g128600
SBS Chr11 6405928 C-T Hetero INTERGENIC
SBS Chr11 11767249 A-G Hetero INTERGENIC
SBS Chr11 12386180 T-A Homo INTERGENIC
SBS Chr12 6349251 C-T Hetero INTERGENIC
SBS Chr12 18257653 G-C Hetero INTERGENIC
SBS Chr12 24722999 A-T Hetero INTERGENIC
SBS Chr12 25093098 C-A Hetero SYNONYMOUS_CODING

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1657635 1657637 2
Deletion Chr11 2125769 2125770 1
Deletion Chr5 5817001 5882000 64999 4
Deletion Chr2 6977832 6977850 18
Deletion Chr4 7436564 7436571 7
Deletion Chr7 8510001 8523000 12999 2
Deletion Chr7 10018001 10070000 51999 3
Deletion Chr1 13833316 13833322 6
Deletion Chr6 13898080 13898262 182
Deletion Chr2 15204456 15204613 157
Deletion Chr6 16664145 16664146 1
Deletion Chr3 18122242 18122243 1
Deletion Chr3 21439103 21439222 119
Deletion Chr12 24663001 24722000 58999 3
Deletion Chr7 25372113 25372116 3 OsKitaake07g229900
Deletion Chr8 28506548 28506550 2
Deletion Chr1 28666152 28666154 2
Deletion Chr1 44047842 44048106 264

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10740525 10740528 2
Insertion Chr4 1886185 1886189 3
Insertion Chr7 4388652 4388655 2
Insertion Chr8 20212178 20212181 2
Insertion Chr2 10324700 10324702 1
Insertion Chr2 18179771 18179773 1
Insertion Chr2 28849671 28849673 1
Insertion Chr8 1396065 1396067 1
Insertion Chr8 11785930 11785932 1
Insertion Chr12 7999508 7999511 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1511664 2132732 OsKitaake08g018700
Inversion Chr8 8573715 9191386
Inversion Chr8 8573727 9191384
Inversion Chr7 10712747 10848185
Inversion Chr7 10842365 10848191
Inversion Chr5 10985686 11048569

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1511683 Chr1 3065172 2
Translocation Chr8 2019537 Chr1 3065180 OsKitaake01g038700
Translocation Chr10 23527162 Chr6 14958518 OsKitaake10g201300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2300011	G-A	Hetero	INTERGENIC
SBS	Chr1	5964990	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g076300
SBS	Chr1	6007855	C-A	Hetero	INTRON
SBS	Chr1	23934015	C-A	Hetero	INTERGENIC
SBS	Chr1	24055220	C-A	Hetero	INTRON
SBS	Chr2	26276788	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g261450
SBS	Chr3	16353032	C-T	Homo	INTERGENIC
SBS	Chr3	21709310	G-T	Homo	INTERGENIC
SBS	Chr3	30084677	A-G	Homo	INTERGENIC
SBS	Chr4	11744121	C-T	Homo	INTERGENIC
SBS	Chr4	13605964	A-T	Hetero	INTERGENIC
SBS	Chr4	14594518	C-A	Homo	INTERGENIC
SBS	Chr4	29875346	G-A	Hetero	INTRON
SBS	Chr4	36161437	G-A	Hetero	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	4987541	T-A	Hetero	INTERGENIC
SBS	Chr5	7495827	A-T	Hetero	INTRON
SBS	Chr6	4181148	T-C	Hetero	INTERGENIC
SBS	Chr6	13918186	C-T	Hetero	INTERGENIC
SBS	Chr7	221896	G-A	Hetero	INTERGENIC
SBS	Chr7	10020921	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g098900
SBS	Chr7	12771159	C-A	Hetero	INTERGENIC
SBS	Chr7	15970593	C-T	Hetero	INTERGENIC
SBS	Chr8	545459	G-A	Hetero	INTERGENIC
SBS	Chr8	7864986	A-G	Homo	INTERGENIC
SBS	Chr8	23194815	T-C	Homo	INTERGENIC
SBS	Chr8	24196082	A-G	Homo	INTRON
SBS	Chr9	6119250	C-T	Hetero	INTERGENIC
SBS	Chr9	9393824	C-T	Hetero	INTERGENIC
SBS	Chr9	13780139	G-A	Hetero	INTERGENIC
SBS	Chr9	20182287	G-A	Hetero	INTERGENIC
SBS	Chr9	21369589	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g184850
SBS	Chr10	9845326	G-C	Hetero	INTERGENIC
SBS	Chr10	15678675	C-A	Homo	INTERGENIC
SBS	Chr10	18196192	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g128600
SBS	Chr11	6405928	C-T	Hetero	INTERGENIC
SBS	Chr11	11767249	A-G	Hetero	INTERGENIC
SBS	Chr11	12386180	T-A	Homo	INTERGENIC
SBS	Chr12	6349251	C-T	Hetero	INTERGENIC
SBS	Chr12	18257653	G-C	Hetero	INTERGENIC
SBS	Chr12	24722999	A-T	Hetero	INTERGENIC
SBS	Chr12	25093098	C-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1657635	1657637	2
Deletion	Chr11	2125769	2125770	1
Deletion	Chr5	5817001	5882000	64999	4
Deletion	Chr2	6977832	6977850	18
Deletion	Chr4	7436564	7436571	7
Deletion	Chr7	8510001	8523000	12999	2
Deletion	Chr7	10018001	10070000	51999	3
Deletion	Chr1	13833316	13833322	6
Deletion	Chr6	13898080	13898262	182
Deletion	Chr2	15204456	15204613	157
Deletion	Chr6	16664145	16664146	1
Deletion	Chr3	18122242	18122243	1
Deletion	Chr3	21439103	21439222	119
Deletion	Chr12	24663001	24722000	58999	3
Deletion	Chr7	25372113	25372116	3	OsKitaake07g229900
Deletion	Chr8	28506548	28506550	2
Deletion	Chr1	28666152	28666154	2
Deletion	Chr1	44047842	44048106	264

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1511664	2132732	OsKitaake08g018700
Inversion	Chr8	8573715	9191386
Inversion	Chr8	8573727	9191384
Inversion	Chr7	10712747	10848185
Inversion	Chr7	10842365	10848191
Inversion	Chr5	10985686	11048569

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes