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Mutant Information

Mutant Name	FN765-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN765-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 113468 C-G Hetero INTERGENIC
SBS Chr1 10179137 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g128300
SBS Chr1 24834372 C-T Homo INTERGENIC
SBS Chr1 38328620 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 22200058 G-A Hetero INTERGENIC
SBS Chr2 24647614 G-T Hetero INTERGENIC
SBS Chr3 8208037 T-G Hetero INTERGENIC
SBS Chr3 14179397 G-C Hetero SPLICE_SITE_DONOR OsKitaake03g185000
SBS Chr3 15967514 A-G Hetero INTERGENIC
SBS Chr4 1664928 G-A Hetero INTERGENIC
SBS Chr5 4860838 C-T Hetero INTERGENIC
SBS Chr5 6085903 A-C Homo INTRON
SBS Chr5 7273374 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 8779612 C-T Hetero INTERGENIC
SBS Chr6 3503093 A-G Hetero INTERGENIC
SBS Chr6 5988255 A-T Hetero INTERGENIC
SBS Chr6 8362054 G-A Hetero INTERGENIC
SBS Chr6 8362055 T-A Hetero INTERGENIC
SBS Chr7 16498179 A-T Homo INTERGENIC
SBS Chr7 27237119 C-T Homo INTERGENIC
SBS Chr8 20433672 G-T Homo INTERGENIC
SBS Chr9 1507145 C-T Hetero INTRON
SBS Chr9 4081507 G-A Hetero INTERGENIC
SBS Chr9 5068808 T-A Hetero INTERGENIC
SBS Chr9 9125787 G-C Hetero INTERGENIC
SBS Chr9 14344516 A-G Hetero INTERGENIC
SBS Chr9 17047328 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g126300
SBS Chr9 17392918 T-A Hetero INTERGENIC
SBS Chr9 17392919 G-A Hetero INTERGENIC
SBS Chr9 19209404 T-A Hetero INTRON
SBS Chr9 22316910 A-T Hetero INTERGENIC
SBS Chr10 139743 C-A Hetero INTERGENIC
SBS Chr11 3936515 G-A Homo INTERGENIC
SBS Chr11 22047984 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 196161 196168 7 OsKitaake12g002200
Deletion Chr10 1352005 1352006 1
Deletion Chr5 1880125 1880127 2 OsKitaake05g021000
Deletion Chr1 5676402 5676408 6
Deletion Chr5 6161576 6161586 10
Deletion Chr7 6932784 6932904 120
Deletion Chr10 11153001 11390000 236999 16
Deletion Chr7 12417588 12417590 2 OsKitaake07g111000
Deletion Chr11 12472477 12472529 52
Deletion Chr5 12992001 13006000 13999 OsKitaake05g101000
Deletion Chr12 14267019 14267024 5
Deletion Chr1 16792001 16809000 16999 2
Deletion Chr12 17617811 17617896 85
Deletion Chr4 23836578 23836585 7
Deletion Chr6 24144123 24144143 20
Deletion Chr2 24658631 24658632 1
Deletion Chr7 28346703 28346705 2
Deletion Chr3 29882085 29882088 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16647037 16647040 2
Insertion Chr6 30157758 30157761 2
Insertion Chr4 31401058 31401061 2
Insertion Chr6 443 445 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2962079 Chr3 27772416 2
Translocation Chr9 2962599 Chr3 27772408 2
Translocation Chr12 12916296 Chr1 5579772

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	113468	C-G	Hetero	INTERGENIC
SBS	Chr1	10179137	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g128300
SBS	Chr1	24834372	C-T	Homo	INTERGENIC
SBS	Chr1	38328620	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22200058	G-A	Hetero	INTERGENIC
SBS	Chr2	24647614	G-T	Hetero	INTERGENIC
SBS	Chr3	8208037	T-G	Hetero	INTERGENIC
SBS	Chr3	14179397	G-C	Hetero	SPLICE_SITE_DONOR	OsKitaake03g185000
SBS	Chr3	15967514	A-G	Hetero	INTERGENIC
SBS	Chr4	1664928	G-A	Hetero	INTERGENIC
SBS	Chr5	4860838	C-T	Hetero	INTERGENIC
SBS	Chr5	6085903	A-C	Homo	INTRON
SBS	Chr5	7273374	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	8779612	C-T	Hetero	INTERGENIC
SBS	Chr6	3503093	A-G	Hetero	INTERGENIC
SBS	Chr6	5988255	A-T	Hetero	INTERGENIC
SBS	Chr6	8362054	G-A	Hetero	INTERGENIC
SBS	Chr6	8362055	T-A	Hetero	INTERGENIC
SBS	Chr7	16498179	A-T	Homo	INTERGENIC
SBS	Chr7	27237119	C-T	Homo	INTERGENIC
SBS	Chr8	20433672	G-T	Homo	INTERGENIC
SBS	Chr9	1507145	C-T	Hetero	INTRON
SBS	Chr9	4081507	G-A	Hetero	INTERGENIC
SBS	Chr9	5068808	T-A	Hetero	INTERGENIC
SBS	Chr9	9125787	G-C	Hetero	INTERGENIC
SBS	Chr9	14344516	A-G	Hetero	INTERGENIC
SBS	Chr9	17047328	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g126300
SBS	Chr9	17392918	T-A	Hetero	INTERGENIC
SBS	Chr9	17392919	G-A	Hetero	INTERGENIC
SBS	Chr9	19209404	T-A	Hetero	INTRON
SBS	Chr9	22316910	A-T	Hetero	INTERGENIC
SBS	Chr10	139743	C-A	Hetero	INTERGENIC
SBS	Chr11	3936515	G-A	Homo	INTERGENIC
SBS	Chr11	22047984	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	196161	196168	7	OsKitaake12g002200
Deletion	Chr10	1352005	1352006	1
Deletion	Chr5	1880125	1880127	2	OsKitaake05g021000
Deletion	Chr1	5676402	5676408	6
Deletion	Chr5	6161576	6161586	10
Deletion	Chr7	6932784	6932904	120
Deletion	Chr10	11153001	11390000	236999	16
Deletion	Chr7	12417588	12417590	2	OsKitaake07g111000
Deletion	Chr11	12472477	12472529	52
Deletion	Chr5	12992001	13006000	13999	OsKitaake05g101000
Deletion	Chr12	14267019	14267024	5
Deletion	Chr1	16792001	16809000	16999	2
Deletion	Chr12	17617811	17617896	85
Deletion	Chr4	23836578	23836585	7
Deletion	Chr6	24144123	24144143	20
Deletion	Chr2	24658631	24658632	1
Deletion	Chr7	28346703	28346705	2
Deletion	Chr3	29882085	29882088	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2962079	Chr3	27772416	2
Translocation	Chr9	2962599	Chr3	27772408	2
Translocation	Chr12	12916296	Chr1	5579772

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes