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Mutant Information

Mutant Name	FN768-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN768-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15019830 G-A Hetero INTRON
SBS Chr1 16264421 C-T Hetero INTERGENIC
SBS Chr1 42219020 A-T Hetero INTERGENIC
SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 15635706 C-T Homo INTERGENIC
SBS Chr2 15725262 G-A Hetero SPLICE_SITE_REGION
SBS Chr2 16167746 C-G Homo INTERGENIC
SBS Chr2 16167747 G-A Homo INTERGENIC
SBS Chr2 20131439 C-T Homo INTERGENIC
SBS Chr2 21352513 T-G Homo INTERGENIC
SBS Chr3 3076365 C-A Hetero INTERGENIC
SBS Chr3 23726046 G-A Hetero INTRON
SBS Chr3 37689033 G-T Hetero INTERGENIC
SBS Chr4 1670413 G-A Hetero INTERGENIC
SBS Chr4 4598974 G-C Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr5 4026319 C-T Hetero INTRON
SBS Chr5 8361593 T-C Hetero INTERGENIC
SBS Chr5 9145919 A-T Hetero INTRON
SBS Chr5 20421967 T-A Hetero INTERGENIC
SBS Chr5 21706655 G-A Hetero INTERGENIC
SBS Chr5 24842958 G-A Hetero INTERGENIC
SBS Chr5 25225852 T-A Hetero INTERGENIC
SBS Chr6 16352580 T-A Hetero INTRON
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr6 26097376 G-A Hetero INTERGENIC
SBS Chr7 18625661 G-T Hetero INTERGENIC
SBS Chr7 26422580 C-T Hetero INTERGENIC
SBS Chr8 22282077 T-A Homo INTERGENIC
SBS Chr9 7537523 C-T Hetero INTERGENIC
SBS Chr10 8893351 C-T Hetero INTERGENIC
SBS Chr10 9977116 C-T Hetero INTERGENIC
SBS Chr10 14536194 A-G Hetero INTERGENIC
SBS Chr10 22389462 T-A Hetero INTERGENIC
SBS Chr11 9998995 C-T Hetero INTERGENIC
SBS Chr11 14674067 G-A Homo INTERGENIC
SBS Chr11 16174251 C-T Homo INTERGENIC
SBS Chr11 20365344 A-T Hetero INTERGENIC
SBS Chr12 1569519 T-A Hetero INTRON
SBS Chr12 14801015 C-T Homo INTERGENIC
SBS Chr12 25342611 T-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2094730 2094739 9
Deletion Chr1 3224896 3224904 8
Deletion Chr1 6413063 6413065 2
Deletion Chr6 6444444 6444446 2
Deletion Chr5 7902065 7902067 2
Deletion Chr11 10547112 10547113 1
Deletion Chr2 10674053 10674055 2
Deletion Chr12 11652227 11652538 311
Deletion Chr6 14886843 14886860 17
Deletion Chr8 15111736 15111737 1
Deletion Chr8 18878456 18878459 3
Deletion Chr2 19201374 19201375 1
Deletion Chr2 20666001 20723000 56999 2
Deletion Chr9 20713001 20720000 6999 OsKitaake09g175900
Deletion Chr3 22322214 22322229 15
Deletion Chr3 23000061 23000062 1 OsKitaake03g248400
Deletion Chr12 25482502 25482503 1
Deletion Chr1 41346756 41346758 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 6260186 6260191 4
Insertion Chr8 19954741 19954744 2
Insertion Chr9 22278627 22278629 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4252661 4843492 OsKitaake06g059000
Inversion Chr6 4252663 4844899 OsKitaake06g059000

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 605494 Chr5 17463024
Translocation Chr9 605500 Chr5 17472589
Translocation Chr10 5047521 Chr5 16094206
Translocation Chr10 5053049 Chr1 16581935
Translocation Chr5 16094216 Chr1 16581924
Translocation Chr5 16228907 Chr3 2013188

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15019830	G-A	Hetero	INTRON
SBS	Chr1	16264421	C-T	Hetero	INTERGENIC
SBS	Chr1	42219020	A-T	Hetero	INTERGENIC
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	15635706	C-T	Homo	INTERGENIC
SBS	Chr2	15725262	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr2	16167746	C-G	Homo	INTERGENIC
SBS	Chr2	16167747	G-A	Homo	INTERGENIC
SBS	Chr2	20131439	C-T	Homo	INTERGENIC
SBS	Chr2	21352513	T-G	Homo	INTERGENIC
SBS	Chr3	3076365	C-A	Hetero	INTERGENIC
SBS	Chr3	23726046	G-A	Hetero	INTRON
SBS	Chr3	37689033	G-T	Hetero	INTERGENIC
SBS	Chr4	1670413	G-A	Hetero	INTERGENIC
SBS	Chr4	4598974	G-C	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr5	4026319	C-T	Hetero	INTRON
SBS	Chr5	8361593	T-C	Hetero	INTERGENIC
SBS	Chr5	9145919	A-T	Hetero	INTRON
SBS	Chr5	20421967	T-A	Hetero	INTERGENIC
SBS	Chr5	21706655	G-A	Hetero	INTERGENIC
SBS	Chr5	24842958	G-A	Hetero	INTERGENIC
SBS	Chr5	25225852	T-A	Hetero	INTERGENIC
SBS	Chr6	16352580	T-A	Hetero	INTRON
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr6	26097376	G-A	Hetero	INTERGENIC
SBS	Chr7	18625661	G-T	Hetero	INTERGENIC
SBS	Chr7	26422580	C-T	Hetero	INTERGENIC
SBS	Chr8	22282077	T-A	Homo	INTERGENIC
SBS	Chr9	7537523	C-T	Hetero	INTERGENIC
SBS	Chr10	8893351	C-T	Hetero	INTERGENIC
SBS	Chr10	9977116	C-T	Hetero	INTERGENIC
SBS	Chr10	14536194	A-G	Hetero	INTERGENIC
SBS	Chr10	22389462	T-A	Hetero	INTERGENIC
SBS	Chr11	9998995	C-T	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Homo	INTERGENIC
SBS	Chr11	16174251	C-T	Homo	INTERGENIC
SBS	Chr11	20365344	A-T	Hetero	INTERGENIC
SBS	Chr12	1569519	T-A	Hetero	INTRON
SBS	Chr12	14801015	C-T	Homo	INTERGENIC
SBS	Chr12	25342611	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2094730	2094739	9
Deletion	Chr1	3224896	3224904	8
Deletion	Chr1	6413063	6413065	2
Deletion	Chr6	6444444	6444446	2
Deletion	Chr5	7902065	7902067	2
Deletion	Chr11	10547112	10547113	1
Deletion	Chr2	10674053	10674055	2
Deletion	Chr12	11652227	11652538	311
Deletion	Chr6	14886843	14886860	17
Deletion	Chr8	15111736	15111737	1
Deletion	Chr8	18878456	18878459	3
Deletion	Chr2	19201374	19201375	1
Deletion	Chr2	20666001	20723000	56999	2
Deletion	Chr9	20713001	20720000	6999	OsKitaake09g175900
Deletion	Chr3	22322214	22322229	15
Deletion	Chr3	23000061	23000062	1	OsKitaake03g248400
Deletion	Chr12	25482502	25482503	1
Deletion	Chr1	41346756	41346758	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4252661	4843492	OsKitaake06g059000
Inversion	Chr6	4252663	4844899	OsKitaake06g059000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes