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Mutant Information

Mutant Name	FN769-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN769-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9865807 G-T Hetero INTRON
SBS Chr1 19998545 T-A Hetero INTERGENIC
SBS Chr1 23015036 T-C Hetero INTERGENIC
SBS Chr1 40233682 C-T Hetero INTERGENIC
SBS Chr1 43826286 A-C Homo INTERGENIC
SBS Chr2 13791449 G-A Hetero INTERGENIC
SBS Chr2 14296887 G-A Hetero INTERGENIC
SBS Chr2 17397348 T-G Hetero INTERGENIC
SBS Chr2 30203681 G-A Hetero INTERGENIC
SBS Chr3 15295526 G-A Homo INTERGENIC
SBS Chr3 19515259 G-A Homo INTERGENIC
SBS Chr4 13504846 G-C Hetero INTERGENIC
SBS Chr5 14549610 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g110900
SBS Chr5 19314162 T-G Hetero INTERGENIC
SBS Chr5 23918967 C-T Hetero UTR_5_PRIME
SBS Chr7 241909 T-G Hetero INTERGENIC
SBS Chr7 8551358 A-G Hetero INTERGENIC
SBS Chr7 9115441 T-G Hetero INTERGENIC
SBS Chr7 11588427 C-T Hetero INTERGENIC
SBS Chr7 24377380 C-T Hetero INTERGENIC
SBS Chr8 2557214 C-G Hetero UTR_3_PRIME
SBS Chr9 1567206 A-T Hetero INTERGENIC
SBS Chr9 2758748 G-T Hetero INTERGENIC
SBS Chr9 11631141 G-A Hetero UTR_3_PRIME
SBS Chr9 12886920 C-T Hetero INTERGENIC
SBS Chr10 4437020 A-C Hetero INTERGENIC
SBS Chr10 10313990 G-A Homo INTERGENIC
SBS Chr10 13556008 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 2317162 G-T Hetero INTRON
SBS Chr11 6380196 G-T Hetero INTERGENIC
SBS Chr11 12793445 G-C Hetero INTERGENIC
SBS Chr11 23194178 A-G Hetero INTERGENIC
SBS Chr11 28967023 G-A Hetero INTERGENIC
SBS Chr12 437624 T-C Hetero INTRON
SBS Chr12 21403130 C-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2743035 2743037 2
Deletion Chr6 3634020 3634022 2
Deletion Chr12 4322310 4322311 1
Deletion Chr10 5413859 5413860 1
Deletion Chr6 5892941 5892945 4 OsKitaake06g077500
Deletion Chr6 8695317 8695318 1
Deletion Chr5 12103891 12103895 4
Deletion Chr10 13266001 13287000 20999
Deletion Chr11 14443745 14443752 7
Deletion Chr10 15762366 15762454 88
Deletion Chr4 16840001 16865000 24999
Deletion Chr9 16912451 16912520 69
Deletion Chr2 18007604 18007606 2
Deletion Chr12 18437652 18437654 2
Deletion Chr3 21575703 21575719 16
Deletion Chr3 22669729 22669741 12
Deletion Chr5 23915213 23915215 2
Deletion Chr3 24305335 24305350 15
Deletion Chr5 28264695 28264697 2
Deletion Chr1 39358533 39358539 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 14873228 14873242 13
Insertion Chr4 26305714 26305716 1
Insertion Chr8 28239126 28239129 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16461527 16494361 OsKitaake04g080300
Inversion Chr4 16461550 16494364 OsKitaake04g080300

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1037143 Chr4 16840088
Translocation Chr10 1038069 Chr4 17324846 2
Translocation Chr5 23098723 Chr2 29151302 OsKitaake05g192300
Translocation Chr5 23098724 Chr2 29152288 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9865807	G-T	Hetero	INTRON
SBS	Chr1	19998545	T-A	Hetero	INTERGENIC
SBS	Chr1	23015036	T-C	Hetero	INTERGENIC
SBS	Chr1	40233682	C-T	Hetero	INTERGENIC
SBS	Chr1	43826286	A-C	Homo	INTERGENIC
SBS	Chr2	13791449	G-A	Hetero	INTERGENIC
SBS	Chr2	14296887	G-A	Hetero	INTERGENIC
SBS	Chr2	17397348	T-G	Hetero	INTERGENIC
SBS	Chr2	30203681	G-A	Hetero	INTERGENIC
SBS	Chr3	15295526	G-A	Homo	INTERGENIC
SBS	Chr3	19515259	G-A	Homo	INTERGENIC
SBS	Chr4	13504846	G-C	Hetero	INTERGENIC
SBS	Chr5	14549610	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g110900
SBS	Chr5	19314162	T-G	Hetero	INTERGENIC
SBS	Chr5	23918967	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	241909	T-G	Hetero	INTERGENIC
SBS	Chr7	8551358	A-G	Hetero	INTERGENIC
SBS	Chr7	9115441	T-G	Hetero	INTERGENIC
SBS	Chr7	11588427	C-T	Hetero	INTERGENIC
SBS	Chr7	24377380	C-T	Hetero	INTERGENIC
SBS	Chr8	2557214	C-G	Hetero	UTR_3_PRIME
SBS	Chr9	1567206	A-T	Hetero	INTERGENIC
SBS	Chr9	2758748	G-T	Hetero	INTERGENIC
SBS	Chr9	11631141	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	12886920	C-T	Hetero	INTERGENIC
SBS	Chr10	4437020	A-C	Hetero	INTERGENIC
SBS	Chr10	10313990	G-A	Homo	INTERGENIC
SBS	Chr10	13556008	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	2317162	G-T	Hetero	INTRON
SBS	Chr11	6380196	G-T	Hetero	INTERGENIC
SBS	Chr11	12793445	G-C	Hetero	INTERGENIC
SBS	Chr11	23194178	A-G	Hetero	INTERGENIC
SBS	Chr11	28967023	G-A	Hetero	INTERGENIC
SBS	Chr12	437624	T-C	Hetero	INTRON
SBS	Chr12	21403130	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2743035	2743037	2
Deletion	Chr6	3634020	3634022	2
Deletion	Chr12	4322310	4322311	1
Deletion	Chr10	5413859	5413860	1
Deletion	Chr6	5892941	5892945	4	OsKitaake06g077500
Deletion	Chr6	8695317	8695318	1
Deletion	Chr5	12103891	12103895	4
Deletion	Chr10	13266001	13287000	20999
Deletion	Chr11	14443745	14443752	7
Deletion	Chr10	15762366	15762454	88
Deletion	Chr4	16840001	16865000	24999
Deletion	Chr9	16912451	16912520	69
Deletion	Chr2	18007604	18007606	2
Deletion	Chr12	18437652	18437654	2
Deletion	Chr3	21575703	21575719	16
Deletion	Chr3	22669729	22669741	12
Deletion	Chr5	23915213	23915215	2
Deletion	Chr3	24305335	24305350	15
Deletion	Chr5	28264695	28264697	2
Deletion	Chr1	39358533	39358539	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16461527	16494361	OsKitaake04g080300
Inversion	Chr4	16461550	16494364	OsKitaake04g080300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes