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Mutant Information

Mutant Name	FN770-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN770-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2113720 C-T Hetero INTERGENIC
SBS Chr1 21079972 T-A Homo INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 26519277 T-A Hetero SYNONYMOUS_CODING
SBS Chr1 26519293 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g258200
SBS Chr1 27951229 G-A Hetero INTERGENIC
SBS Chr1 30793355 G-A Hetero INTRON
SBS Chr1 40864170 G-A Homo UTR_5_PRIME
SBS Chr2 3231199 C-T Hetero INTERGENIC
SBS Chr2 14053257 A-G Homo INTERGENIC
SBS Chr2 25211510 T-A Hetero INTERGENIC
SBS Chr3 1333566 T-A Homo INTERGENIC
SBS Chr3 3155566 C-T Hetero INTERGENIC
SBS Chr3 3439357 G-A Homo INTERGENIC
SBS Chr3 4074069 G-A Homo INTERGENIC
SBS Chr3 8974177 C-T Homo INTERGENIC
SBS Chr3 18584534 G-T Hetero INTERGENIC
SBS Chr3 24281622 T-A Hetero SYNONYMOUS_CODING
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr3 34533459 A-G Hetero INTERGENIC
SBS Chr4 7369840 G-A Hetero INTERGENIC
SBS Chr4 14392597 G-C Hetero INTERGENIC
SBS Chr4 17235560 G-A Hetero INTERGENIC
SBS Chr5 1003831 C-T Hetero INTRON
SBS Chr5 12940299 T-A Homo INTRON
SBS Chr5 13723354 C-A Homo INTERGENIC
SBS Chr5 20605190 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g164300
SBS Chr5 24512817 C-T Hetero INTERGENIC
SBS Chr6 14630498 T-C Hetero INTERGENIC
SBS Chr6 29427075 C-T Hetero INTRON
SBS Chr7 28155200 C-T Homo INTERGENIC
SBS Chr8 3835949 G-A Hetero INTERGENIC
SBS Chr9 2911148 G-A Hetero INTERGENIC
SBS Chr9 8337848 C-G Hetero INTERGENIC
SBS Chr10 7715233 A-G Hetero INTERGENIC
SBS Chr10 18593802 T-C Hetero INTERGENIC
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr12 16592876 C-A Hetero INTERGENIC
SBS Chr12 16701303 A-G Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2193712 2193717 5
Deletion Chr8 3304001 3330000 25999 3
Deletion Chr6 3807928 3807938 10
Deletion Chr6 4903866 4903867 1
Deletion Chr2 5490807 5490809 2
Deletion Chr8 7606536 7606553 17
Deletion Chr2 8176001 8186000 9999
Deletion Chr2 10444442 10444443 1
Deletion Chr12 12023340 12023342 2
Deletion Chr5 12390798 12390805 7
Deletion Chr5 13004777 13004778 1
Deletion Chr10 13524191 13524202 11 OsKitaake10g081500
Deletion Chr5 13751266 13751275 9
Deletion Chr5 13997740 13997751 11
Deletion Chr6 15291581 15291587 6
Deletion Chr2 15364285 15364287 2
Deletion Chr2 17153690 17153702 12
Deletion Chr1 17454128 17454139 11
Deletion Chr1 18031061 18031062 1
Deletion Chr1 19437750 19437775 25
Deletion Chr6 22376271 22376273 2
Deletion Chr11 24081875 24081883 8
Deletion Chr6 28103524 28103525 1
Deletion Chr5 28447719 28447723 4
Deletion Chr4 32708100 32708106 6
Deletion Chr2 36113699 36113702 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 17363180 17363182 1
Insertion Chr7 11780835 11780840 4
Insertion Chr7 15089863 15089866 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 10676539 10742233

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2113720	C-T	Hetero	INTERGENIC
SBS	Chr1	21079972	T-A	Homo	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	26519277	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	26519293	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g258200
SBS	Chr1	27951229	G-A	Hetero	INTERGENIC
SBS	Chr1	30793355	G-A	Hetero	INTRON
SBS	Chr1	40864170	G-A	Homo	UTR_5_PRIME
SBS	Chr2	3231199	C-T	Hetero	INTERGENIC
SBS	Chr2	14053257	A-G	Homo	INTERGENIC
SBS	Chr2	25211510	T-A	Hetero	INTERGENIC
SBS	Chr3	1333566	T-A	Homo	INTERGENIC
SBS	Chr3	3155566	C-T	Hetero	INTERGENIC
SBS	Chr3	3439357	G-A	Homo	INTERGENIC
SBS	Chr3	4074069	G-A	Homo	INTERGENIC
SBS	Chr3	8974177	C-T	Homo	INTERGENIC
SBS	Chr3	18584534	G-T	Hetero	INTERGENIC
SBS	Chr3	24281622	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr3	34533459	A-G	Hetero	INTERGENIC
SBS	Chr4	7369840	G-A	Hetero	INTERGENIC
SBS	Chr4	14392597	G-C	Hetero	INTERGENIC
SBS	Chr4	17235560	G-A	Hetero	INTERGENIC
SBS	Chr5	1003831	C-T	Hetero	INTRON
SBS	Chr5	12940299	T-A	Homo	INTRON
SBS	Chr5	13723354	C-A	Homo	INTERGENIC
SBS	Chr5	20605190	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g164300
SBS	Chr5	24512817	C-T	Hetero	INTERGENIC
SBS	Chr6	14630498	T-C	Hetero	INTERGENIC
SBS	Chr6	29427075	C-T	Hetero	INTRON
SBS	Chr7	28155200	C-T	Homo	INTERGENIC
SBS	Chr8	3835949	G-A	Hetero	INTERGENIC
SBS	Chr9	2911148	G-A	Hetero	INTERGENIC
SBS	Chr9	8337848	C-G	Hetero	INTERGENIC
SBS	Chr10	7715233	A-G	Hetero	INTERGENIC
SBS	Chr10	18593802	T-C	Hetero	INTERGENIC
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr12	16592876	C-A	Hetero	INTERGENIC
SBS	Chr12	16701303	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2193712	2193717	5
Deletion	Chr8	3304001	3330000	25999	3
Deletion	Chr6	3807928	3807938	10
Deletion	Chr6	4903866	4903867	1
Deletion	Chr2	5490807	5490809	2
Deletion	Chr8	7606536	7606553	17
Deletion	Chr2	8176001	8186000	9999
Deletion	Chr2	10444442	10444443	1
Deletion	Chr12	12023340	12023342	2
Deletion	Chr5	12390798	12390805	7
Deletion	Chr5	13004777	13004778	1
Deletion	Chr10	13524191	13524202	11	OsKitaake10g081500
Deletion	Chr5	13751266	13751275	9
Deletion	Chr5	13997740	13997751	11
Deletion	Chr6	15291581	15291587	6
Deletion	Chr2	15364285	15364287	2
Deletion	Chr2	17153690	17153702	12
Deletion	Chr1	17454128	17454139	11
Deletion	Chr1	18031061	18031062	1
Deletion	Chr1	19437750	19437775	25
Deletion	Chr6	22376271	22376273	2
Deletion	Chr11	24081875	24081883	8
Deletion	Chr6	28103524	28103525	1
Deletion	Chr5	28447719	28447723	4
Deletion	Chr4	32708100	32708106	6
Deletion	Chr2	36113699	36113702	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10676539	10742233

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes