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Mutant Information

Mutant Name	FN771-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN771-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16870493 G-A Hetero INTERGENIC
SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr1 21980311 G-A Hetero INTERGENIC
SBS Chr1 31640939 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g318000
SBS Chr1 31695535 G-T Hetero INTERGENIC
SBS Chr2 25163252 G-T Hetero INTERGENIC
SBS Chr2 25203163 T-C Hetero INTERGENIC
SBS Chr2 25458552 C-T Hetero INTERGENIC
SBS Chr3 26247722 T-C Hetero INTERGENIC
SBS Chr5 6136242 T-A Hetero INTERGENIC
SBS Chr5 6136243 A-T Hetero INTERGENIC
SBS Chr5 8182627 C-A Homo INTERGENIC
SBS Chr5 10502891 A-T Homo INTERGENIC
SBS Chr5 14080800 A-T Hetero INTERGENIC
SBS Chr5 25112252 T-C Hetero INTERGENIC
SBS Chr6 5402783 C-T Hetero INTERGENIC
SBS Chr6 9761729 C-T Hetero INTERGENIC
SBS Chr7 10701450 G-A Hetero INTERGENIC
SBS Chr7 12040736 C-T Hetero INTERGENIC
SBS Chr7 18146390 G-T Hetero INTERGENIC
SBS Chr7 27336849 A-T Homo INTERGENIC
SBS Chr8 10971330 C-G Hetero INTERGENIC
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr9 3954293 A-C Hetero INTRON
SBS Chr9 20501651 G-T Hetero INTERGENIC
SBS Chr9 21865809 G-A Hetero INTRON
SBS Chr10 13586576 G-A Hetero INTERGENIC
SBS Chr10 20185082 A-G Hetero INTERGENIC
SBS Chr11 61895 G-A Homo INTERGENIC
SBS Chr11 1419380 T-C Homo INTERGENIC
SBS Chr12 8158868 G-A Homo INTERGENIC
SBS Chr12 13640626 A-G Hetero INTERGENIC
SBS Chr12 14737583 G-A Hetero INTERGENIC
SBS Chr12 16660383 G-C Hetero INTERGENIC
SBS Chr12 24392945 A-T Homo INTERGENIC
SBS Chr12 24392946 G-T Homo INTERGENIC
SBS Chr12 26313907 A-G Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1249001 1301000 51999 7
Deletion Chr11 1411819 1411827 8
Deletion Chr3 5224001 5246000 21999 OsKitaake03g074400
Deletion Chr10 5781852 5781855 3
Deletion Chr11 5911507 5911508 1
Deletion Chr5 9278001 9340000 61999 3
Deletion Chr1 12214353 12214364 11
Deletion Chr7 12991964 12992031 67
Deletion Chr5 13028890 13028896 6
Deletion Chr10 13264002 13264003 1
Deletion Chr5 13866343 13866358 15
Deletion Chr9 19215686 19215699 13
Deletion Chr7 19668281 19668282 1
Deletion Chr5 21405858 21405872 14
Deletion Chr10 22523114 22523125 11
Deletion Chr3 26275503 26275512 9
Deletion Chr7 29636524 29636527 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 12005937 12005940 2
Insertion Chr10 23539482 23539487 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 4808528 5223239 OsKitaake03g069400
Inversion Chr3 4808552 5010121 OsKitaake03g069400
Inversion Chr5 8456258 9278020 OsKitaake05g086600
Inversion Chr5 8456267 9276316

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 694011 Chr2 26179936 OsKitaake02g259600
Translocation Chr5 713372 Chr2 26179931 2
Translocation Chr3 5009749 Chr1 18967243 OsKitaake01g190500
Translocation Chr3 5010114 Chr1 18967248 OsKitaake01g190500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16870493	G-A	Hetero	INTERGENIC
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Hetero	INTERGENIC
SBS	Chr1	31640939	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g318000
SBS	Chr1	31695535	G-T	Hetero	INTERGENIC
SBS	Chr2	25163252	G-T	Hetero	INTERGENIC
SBS	Chr2	25203163	T-C	Hetero	INTERGENIC
SBS	Chr2	25458552	C-T	Hetero	INTERGENIC
SBS	Chr3	26247722	T-C	Hetero	INTERGENIC
SBS	Chr5	6136242	T-A	Hetero	INTERGENIC
SBS	Chr5	6136243	A-T	Hetero	INTERGENIC
SBS	Chr5	8182627	C-A	Homo	INTERGENIC
SBS	Chr5	10502891	A-T	Homo	INTERGENIC
SBS	Chr5	14080800	A-T	Hetero	INTERGENIC
SBS	Chr5	25112252	T-C	Hetero	INTERGENIC
SBS	Chr6	5402783	C-T	Hetero	INTERGENIC
SBS	Chr6	9761729	C-T	Hetero	INTERGENIC
SBS	Chr7	10701450	G-A	Hetero	INTERGENIC
SBS	Chr7	12040736	C-T	Hetero	INTERGENIC
SBS	Chr7	18146390	G-T	Hetero	INTERGENIC
SBS	Chr7	27336849	A-T	Homo	INTERGENIC
SBS	Chr8	10971330	C-G	Hetero	INTERGENIC
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr9	3954293	A-C	Hetero	INTRON
SBS	Chr9	20501651	G-T	Hetero	INTERGENIC
SBS	Chr9	21865809	G-A	Hetero	INTRON
SBS	Chr10	13586576	G-A	Hetero	INTERGENIC
SBS	Chr10	20185082	A-G	Hetero	INTERGENIC
SBS	Chr11	61895	G-A	Homo	INTERGENIC
SBS	Chr11	1419380	T-C	Homo	INTERGENIC
SBS	Chr12	8158868	G-A	Homo	INTERGENIC
SBS	Chr12	13640626	A-G	Hetero	INTERGENIC
SBS	Chr12	14737583	G-A	Hetero	INTERGENIC
SBS	Chr12	16660383	G-C	Hetero	INTERGENIC
SBS	Chr12	24392945	A-T	Homo	INTERGENIC
SBS	Chr12	24392946	G-T	Homo	INTERGENIC
SBS	Chr12	26313907	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1249001	1301000	51999	7
Deletion	Chr11	1411819	1411827	8
Deletion	Chr3	5224001	5246000	21999	OsKitaake03g074400
Deletion	Chr10	5781852	5781855	3
Deletion	Chr11	5911507	5911508	1
Deletion	Chr5	9278001	9340000	61999	3
Deletion	Chr1	12214353	12214364	11
Deletion	Chr7	12991964	12992031	67
Deletion	Chr5	13028890	13028896	6
Deletion	Chr10	13264002	13264003	1
Deletion	Chr5	13866343	13866358	15
Deletion	Chr9	19215686	19215699	13
Deletion	Chr7	19668281	19668282	1
Deletion	Chr5	21405858	21405872	14
Deletion	Chr10	22523114	22523125	11
Deletion	Chr3	26275503	26275512	9
Deletion	Chr7	29636524	29636527	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4808528	5223239	OsKitaake03g069400
Inversion	Chr3	4808552	5010121	OsKitaake03g069400
Inversion	Chr5	8456258	9278020	OsKitaake05g086600
Inversion	Chr5	8456267	9276316

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes