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Mutant Information

Mutant Name	FN772-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN772-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26027887 C-T Homo INTRON
SBS Chr1 28853029 G-T Hetero INTRON
SBS Chr1 29804071 C-T Hetero INTERGENIC
SBS Chr1 30133926 G-T Homo INTERGENIC
SBS Chr1 31685312 T-C Hetero INTRON
SBS Chr2 3475751 G-T Hetero INTERGENIC
SBS Chr2 8557957 A-G Hetero INTERGENIC
SBS Chr2 15552045 G-T Hetero INTERGENIC
SBS Chr2 24905766 G-A Homo INTERGENIC
SBS Chr3 20753791 A-G Hetero INTERGENIC
SBS Chr3 21210169 T-C Hetero INTERGENIC
SBS Chr3 21368806 A-C Hetero INTERGENIC
SBS Chr3 33167455 T-C Hetero INTERGENIC
SBS Chr3 35149845 C-T Hetero INTERGENIC
SBS Chr4 6024596 C-T Hetero INTERGENIC
SBS Chr4 10226880 G-A Hetero INTERGENIC
SBS Chr4 12394268 G-A Hetero INTERGENIC
SBS Chr5 500440 G-A Hetero INTERGENIC
SBS Chr5 500441 G-A Hetero INTERGENIC
SBS Chr5 2185078 C-G Hetero INTERGENIC
SBS Chr5 6392872 C-T Hetero INTERGENIC
SBS Chr6 12738170 G-A Hetero INTERGENIC
SBS Chr6 13371515 A-G Hetero INTERGENIC
SBS Chr6 14266330 A-G Hetero INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr6 19648312 C-T Hetero INTERGENIC
SBS Chr6 19648316 G-T Hetero INTERGENIC
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 16108629 A-G Hetero INTRON
SBS Chr8 11590995 T-A Hetero INTERGENIC
SBS Chr8 14574877 C-A Homo UTR_3_PRIME
SBS Chr8 15057286 C-T Homo INTERGENIC
SBS Chr8 19678258 T-A Hetero INTERGENIC
SBS Chr8 19678259 G-A Hetero INTERGENIC
SBS Chr8 24795635 C-T Hetero INTERGENIC
SBS Chr8 25078741 C-T Hetero INTERGENIC
SBS Chr8 26362292 T-A Hetero INTERGENIC
SBS Chr8 26770530 A-T Hetero INTERGENIC
SBS Chr9 2977475 C-T Hetero INTERGENIC
SBS Chr10 1310473 T-C Hetero INTERGENIC
SBS Chr10 11122445 G-A Homo INTERGENIC
SBS Chr10 11779561 A-G Homo INTERGENIC
SBS Chr10 19376726 T-C Hetero INTERGENIC
SBS Chr11 11228331 T-C Hetero INTERGENIC
SBS Chr11 11871656 G-C Hetero INTERGENIC
SBS Chr11 17914334 T-A Homo INTERGENIC
SBS Chr11 22425996 G-A Hetero SPLICE_SITE_REGION
SBS Chr11 23947599 T-A Hetero INTERGENIC
SBS Chr11 26229459 T-G Hetero INTERGENIC
SBS Chr11 28299608 C-A Hetero INTERGENIC
SBS Chr12 1086026 C-T Homo INTERGENIC
SBS Chr12 3372566 G-C Homo NON_SYNONYMOUS_CODING OsKitaake12g047500
SBS Chr12 18822226 G-A Hetero INTERGENIC
SBS Chr12 23328006 G-A Hetero INTERGENIC
SBS Chr12 26721946 T-C Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 364783 364791 8
Deletion Chr4 5111320 5111321 1
Deletion Chr6 5673822 5673824 2
Deletion Chr5 6015896 6015915 19
Deletion Chr6 6119692 6119693 1
Deletion Chr9 6192577 6192578 1
Deletion Chr1 6761612 6761613 1
Deletion Chr4 6917392 6917396 4
Deletion Chr5 6927265 6927266 1
Deletion Chr12 8265650 8265651 1
Deletion Chr7 11449688 11449689 1
Deletion Chr8 13308782 13308783 1
Deletion Chr6 19105001 19470000 364999 27
Deletion Chr6 19474001 19649000 174999 9
Deletion Chr2 21401198 21401200 2
Deletion Chr6 23507529 23507530 1
Deletion Chr1 25884397 25884399 2
Deletion Chr2 31777698 31777704 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 19570406 19570413 6
Insertion Chr5 16987625 16987628 2
Insertion Chr8 17352396 17352399 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 11032443 11340323
Inversion Chr4 18541134 19142863

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11032442 Chr5 28124629
Translocation Chr6 11121012 Chr5 28125578

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26027887	C-T	Homo	INTRON
SBS	Chr1	28853029	G-T	Hetero	INTRON
SBS	Chr1	29804071	C-T	Hetero	INTERGENIC
SBS	Chr1	30133926	G-T	Homo	INTERGENIC
SBS	Chr1	31685312	T-C	Hetero	INTRON
SBS	Chr2	3475751	G-T	Hetero	INTERGENIC
SBS	Chr2	8557957	A-G	Hetero	INTERGENIC
SBS	Chr2	15552045	G-T	Hetero	INTERGENIC
SBS	Chr2	24905766	G-A	Homo	INTERGENIC
SBS	Chr3	20753791	A-G	Hetero	INTERGENIC
SBS	Chr3	21210169	T-C	Hetero	INTERGENIC
SBS	Chr3	21368806	A-C	Hetero	INTERGENIC
SBS	Chr3	33167455	T-C	Hetero	INTERGENIC
SBS	Chr3	35149845	C-T	Hetero	INTERGENIC
SBS	Chr4	6024596	C-T	Hetero	INTERGENIC
SBS	Chr4	10226880	G-A	Hetero	INTERGENIC
SBS	Chr4	12394268	G-A	Hetero	INTERGENIC
SBS	Chr5	500440	G-A	Hetero	INTERGENIC
SBS	Chr5	500441	G-A	Hetero	INTERGENIC
SBS	Chr5	2185078	C-G	Hetero	INTERGENIC
SBS	Chr5	6392872	C-T	Hetero	INTERGENIC
SBS	Chr6	12738170	G-A	Hetero	INTERGENIC
SBS	Chr6	13371515	A-G	Hetero	INTERGENIC
SBS	Chr6	14266330	A-G	Hetero	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr6	19648312	C-T	Hetero	INTERGENIC
SBS	Chr6	19648316	G-T	Hetero	INTERGENIC
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	16108629	A-G	Hetero	INTRON
SBS	Chr8	11590995	T-A	Hetero	INTERGENIC
SBS	Chr8	14574877	C-A	Homo	UTR_3_PRIME
SBS	Chr8	15057286	C-T	Homo	INTERGENIC
SBS	Chr8	19678258	T-A	Hetero	INTERGENIC
SBS	Chr8	19678259	G-A	Hetero	INTERGENIC
SBS	Chr8	24795635	C-T	Hetero	INTERGENIC
SBS	Chr8	25078741	C-T	Hetero	INTERGENIC
SBS	Chr8	26362292	T-A	Hetero	INTERGENIC
SBS	Chr8	26770530	A-T	Hetero	INTERGENIC
SBS	Chr9	2977475	C-T	Hetero	INTERGENIC
SBS	Chr10	1310473	T-C	Hetero	INTERGENIC
SBS	Chr10	11122445	G-A	Homo	INTERGENIC
SBS	Chr10	11779561	A-G	Homo	INTERGENIC
SBS	Chr10	19376726	T-C	Hetero	INTERGENIC
SBS	Chr11	11228331	T-C	Hetero	INTERGENIC
SBS	Chr11	11871656	G-C	Hetero	INTERGENIC
SBS	Chr11	17914334	T-A	Homo	INTERGENIC
SBS	Chr11	22425996	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr11	23947599	T-A	Hetero	INTERGENIC
SBS	Chr11	26229459	T-G	Hetero	INTERGENIC
SBS	Chr11	28299608	C-A	Hetero	INTERGENIC
SBS	Chr12	1086026	C-T	Homo	INTERGENIC
SBS	Chr12	3372566	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g047500
SBS	Chr12	18822226	G-A	Hetero	INTERGENIC
SBS	Chr12	23328006	G-A	Hetero	INTERGENIC
SBS	Chr12	26721946	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	364783	364791	8
Deletion	Chr4	5111320	5111321	1
Deletion	Chr6	5673822	5673824	2
Deletion	Chr5	6015896	6015915	19
Deletion	Chr6	6119692	6119693	1
Deletion	Chr9	6192577	6192578	1
Deletion	Chr1	6761612	6761613	1
Deletion	Chr4	6917392	6917396	4
Deletion	Chr5	6927265	6927266	1
Deletion	Chr12	8265650	8265651	1
Deletion	Chr7	11449688	11449689	1
Deletion	Chr8	13308782	13308783	1
Deletion	Chr6	19105001	19470000	364999	27
Deletion	Chr6	19474001	19649000	174999	9
Deletion	Chr2	21401198	21401200	2
Deletion	Chr6	23507529	23507530	1
Deletion	Chr1	25884397	25884399	2
Deletion	Chr2	31777698	31777704	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11032443	11340323
Inversion	Chr4	18541134	19142863

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes