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| Mutant Information |
|---|
| Mutant Name | FN773-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN773-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8953568 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 41410829 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19081499 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24791510 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 28227121 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 7900050 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10716678 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35508963 | A-T | Homo | INTRON | |
| SBS | Chr5 | 4084238 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 16923520 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 2449133 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 6533843 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10312153 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 15477307 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 15488453 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 15488454 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 28715 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 26071582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13208559 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17811865 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 3843994 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 11886891 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13449828 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25276345 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25278240 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 27224389 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 9318929 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21524504 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 23184930 | G-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 228501 | 228502 | 1 | |
| Deletion | Chr4 | 263394 | 263399 | 5 | OsKitaake04g001500 |
| Deletion | Chr6 | 1801247 | 1801249 | 2 | |
| Deletion | Chr8 | 7450001 | 7493000 | 42999 | OsKitaake08g070366 |
| Deletion | Chr6 | 10097299 | 10097302 | 3 | |
| Deletion | Chr3 | 10215535 | 10215536 | 1 | |
| Deletion | Chr8 | 10839116 | 10839120 | 4 | |
| Deletion | Chr7 | 11864371 | 11864372 | 1 | |
| Deletion | Chr7 | 15006001 | 15021000 | 14999 | OsKitaake07g125600 |
| Deletion | Chr12 | 15494316 | 15494317 | 1 | |
| Deletion | Chr6 | 20900432 | 20900443 | 11 | |
| Deletion | Chr2 | 22197337 | 22197357 | 20 | |
| Deletion | Chr11 | 23157807 | 23157810 | 3 | |
| Deletion | Chr11 | 27303260 | 27303261 | 1 | |
| Deletion | Chr3 | 27376758 | 27376759 | 1 | OsKitaake03g282400 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13850924 | 13850926 | 1 | |
| Insertion | Chr2 | 27799938 | 27799940 | 1 | OsKitaake02g279500  |
| Insertion | Chr7 | 22848895 | 22848898 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 5945328 | 6519896 | |
| Inversion | Chr3 | 6519906 | 6640364 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 15006076 | Chr3 | 6640364 | |
| Translocation | Chr3 | 20600748 | Chr1 | 7554890 | OsKitaake01g094700 |
| Translocation | Chr3 | 20601075 | Chr1 | 7554887 | OsKitaake01g094700 |