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Mutant Information

Mutant Name	FN774-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN774-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 245885 C-G Hetero INTERGENIC
SBS Chr1 245893 T-C Hetero INTERGENIC
SBS Chr1 22099690 C-T Hetero INTERGENIC
SBS Chr2 16686542 A-G Hetero INTERGENIC
SBS Chr2 37155179 C-T Hetero INTERGENIC
SBS Chr3 13371314 G-C Hetero UTR_3_PRIME
SBS Chr3 14862894 G-A Hetero INTERGENIC
SBS Chr3 16999489 T-A Hetero INTERGENIC
SBS Chr3 23748684 G-A Hetero INTERGENIC
SBS Chr4 23066920 G-A Hetero INTERGENIC
SBS Chr4 25915186 T-A Hetero INTERGENIC
SBS Chr5 7201103 G-A Hetero INTERGENIC
SBS Chr5 30133574 G-A Hetero INTERGENIC
SBS Chr6 11725026 C-A Hetero INTERGENIC
SBS Chr6 13020981 C-T Hetero INTERGENIC
SBS Chr6 15501126 T-G Hetero INTRON
SBS Chr7 11687711 C-T Hetero INTERGENIC
SBS Chr7 13970309 G-A Homo INTERGENIC
SBS Chr7 17648608 A-G Hetero INTERGENIC
SBS Chr8 21066316 A-G Hetero INTERGENIC
SBS Chr9 554365 C-T Hetero INTERGENIC
SBS Chr9 4599352 C-T Hetero INTERGENIC
SBS Chr9 20443428 T-C Hetero INTERGENIC
SBS Chr9 21179287 C-A Homo NON_SYNONYMOUS_CODING OsKitaake09g183300
SBS Chr9 21202762 G-A Hetero INTERGENIC
SBS Chr10 4657413 G-T Hetero INTERGENIC
SBS Chr11 5930359 C-T Homo INTRON
SBS Chr11 6550387 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 21621665 C-T Hetero INTERGENIC
SBS Chr12 3693930 T-C Hetero SYNONYMOUS_CODING
SBS Chr12 4313496 G-A Hetero INTERGENIC
SBS Chr12 5593993 C-T Hetero INTERGENIC
SBS Chr12 15935742 A-G Hetero INTERGENIC
SBS Chr12 18358089 C-T Hetero INTERGENIC
SBS Chr12 25880937 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 571322 571342 20
Deletion Chr5 951928 951937 9
Deletion Chr2 1078068 1078069 1
Deletion Chr1 1701321 1701322 1
Deletion Chr6 3039490 3039499 9
Deletion Chr12 3328487 3328488 1
Deletion Chr11 6167510 6167511 1
Deletion Chr11 10261435 10261439 4
Deletion Chr1 11115078 11115080 2
Deletion Chr9 14408820 14408822 2
Deletion Chr10 15120350 15120351 1
Deletion Chr10 19469697 19469700 3
Deletion Chr4 20461746 20461751 5
Deletion Chr5 22647472 22647473 1
Deletion Chr1 33584810 33584813 3
Deletion Chr1 34967443 34967447 4
Deletion Chr1 40799054 40799055 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3730005 3730008 2
Insertion Chr6 25686375 25686377 1
Insertion Chr6 29951360 29951363 2
Insertion Chr7 11552155 11552158 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6196273 6196988 OsKitaake07g073500
Inversion Chr7 6196274 6196983 OsKitaake07g073500
Inversion Chr6 12942044 13580564 OsKitaake06g142400
Inversion Chr6 12942045 13580600 OsKitaake06g142400
Inversion Chr7 29202223 29260491 OsKitaake07g280800

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2517249 Chr4 25723821 OsKitaake04g178600
Translocation Chr11 2517335 Chr4 25723837 OsKitaake04g178600
Translocation Chr4 25723818 Chr3 30709467 OsKitaake04g178600
Translocation Chr4 25724043 Chr3 30709406 OsKitaake04g178600
Translocation Chr7 29260475 Chr5 3461788 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	245885	C-G	Hetero	INTERGENIC
SBS	Chr1	245893	T-C	Hetero	INTERGENIC
SBS	Chr1	22099690	C-T	Hetero	INTERGENIC
SBS	Chr2	16686542	A-G	Hetero	INTERGENIC
SBS	Chr2	37155179	C-T	Hetero	INTERGENIC
SBS	Chr3	13371314	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	14862894	G-A	Hetero	INTERGENIC
SBS	Chr3	16999489	T-A	Hetero	INTERGENIC
SBS	Chr3	23748684	G-A	Hetero	INTERGENIC
SBS	Chr4	23066920	G-A	Hetero	INTERGENIC
SBS	Chr4	25915186	T-A	Hetero	INTERGENIC
SBS	Chr5	7201103	G-A	Hetero	INTERGENIC
SBS	Chr5	30133574	G-A	Hetero	INTERGENIC
SBS	Chr6	11725026	C-A	Hetero	INTERGENIC
SBS	Chr6	13020981	C-T	Hetero	INTERGENIC
SBS	Chr6	15501126	T-G	Hetero	INTRON
SBS	Chr7	11687711	C-T	Hetero	INTERGENIC
SBS	Chr7	13970309	G-A	Homo	INTERGENIC
SBS	Chr7	17648608	A-G	Hetero	INTERGENIC
SBS	Chr8	21066316	A-G	Hetero	INTERGENIC
SBS	Chr9	554365	C-T	Hetero	INTERGENIC
SBS	Chr9	4599352	C-T	Hetero	INTERGENIC
SBS	Chr9	20443428	T-C	Hetero	INTERGENIC
SBS	Chr9	21179287	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g183300
SBS	Chr9	21202762	G-A	Hetero	INTERGENIC
SBS	Chr10	4657413	G-T	Hetero	INTERGENIC
SBS	Chr11	5930359	C-T	Homo	INTRON
SBS	Chr11	6550387	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	21621665	C-T	Hetero	INTERGENIC
SBS	Chr12	3693930	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	4313496	G-A	Hetero	INTERGENIC
SBS	Chr12	5593993	C-T	Hetero	INTERGENIC
SBS	Chr12	15935742	A-G	Hetero	INTERGENIC
SBS	Chr12	18358089	C-T	Hetero	INTERGENIC
SBS	Chr12	25880937	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	571322	571342	20
Deletion	Chr5	951928	951937	9
Deletion	Chr2	1078068	1078069	1
Deletion	Chr1	1701321	1701322	1
Deletion	Chr6	3039490	3039499	9
Deletion	Chr12	3328487	3328488	1
Deletion	Chr11	6167510	6167511	1
Deletion	Chr11	10261435	10261439	4
Deletion	Chr1	11115078	11115080	2
Deletion	Chr9	14408820	14408822	2
Deletion	Chr10	15120350	15120351	1
Deletion	Chr10	19469697	19469700	3
Deletion	Chr4	20461746	20461751	5
Deletion	Chr5	22647472	22647473	1
Deletion	Chr1	33584810	33584813	3
Deletion	Chr1	34967443	34967447	4
Deletion	Chr1	40799054	40799055	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6196273	6196988	OsKitaake07g073500
Inversion	Chr7	6196274	6196983	OsKitaake07g073500
Inversion	Chr6	12942044	13580564	OsKitaake06g142400
Inversion	Chr6	12942045	13580600	OsKitaake06g142400
Inversion	Chr7	29202223	29260491	OsKitaake07g280800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes