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Mutant Information

Mutant Name	FN775-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN775-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11359977 G-T Homo INTRON
SBS Chr1 13804553 A-T Homo INTERGENIC
SBS Chr1 33856937 G-A Hetero INTERGENIC
SBS Chr1 34866076 A-T Hetero INTERGENIC
SBS Chr2 23086 A-T Hetero INTRON
SBS Chr2 4943628 C-A Hetero UTR_3_PRIME
SBS Chr2 8510952 A-C Hetero INTERGENIC
SBS Chr2 8510953 C-A Hetero INTERGENIC
SBS Chr3 4806220 G-A Hetero UTR_5_PRIME
SBS Chr3 4806221 G-T Hetero UTR_5_PRIME
SBS Chr3 6041989 T-G Hetero UTR_3_PRIME
SBS Chr3 15921922 C-G Hetero INTERGENIC
SBS Chr3 18355189 C-T Hetero INTERGENIC
SBS Chr3 18493009 T-C Hetero INTERGENIC
SBS Chr3 21983894 A-G Hetero INTERGENIC
SBS Chr3 26305624 C-G Homo INTERGENIC
SBS Chr4 473133 A-C Homo SPLICE_SITE_REGION
SBS Chr4 8976878 A-T Hetero INTERGENIC
SBS Chr4 13674487 T-C Homo INTERGENIC
SBS Chr4 30990623 G-T Hetero INTERGENIC
SBS Chr4 30990624 C-T Hetero INTERGENIC
SBS Chr4 32054116 C-T Hetero INTERGENIC
SBS Chr4 36092452 G-A Homo INTERGENIC
SBS Chr5 18598206 G-A Homo INTERGENIC
SBS Chr5 24115596 T-C Homo INTERGENIC
SBS Chr6 29632573 T-C Homo INTERGENIC
SBS Chr7 3728562 C-T Hetero INTERGENIC
SBS Chr7 6055864 T-C Hetero INTERGENIC
SBS Chr7 8138984 G-C Hetero INTERGENIC
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 22551671 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g192200
SBS Chr7 24077192 C-A Hetero INTERGENIC
SBS Chr7 24077193 G-A Hetero INTERGENIC
SBS Chr8 10464673 G-T Homo INTERGENIC
SBS Chr8 22135975 A-T Hetero SYNONYMOUS_CODING
SBS Chr8 23886771 C-A Hetero INTRON
SBS Chr8 27264682 G-A Hetero INTERGENIC
SBS Chr9 7354633 G-T Hetero INTERGENIC
SBS Chr9 22525171 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g205900
SBS Chr10 20903757 G-A Hetero INTERGENIC
SBS Chr11 3558068 G-A Hetero INTRON
SBS Chr11 6498487 T-C Hetero INTERGENIC
SBS Chr11 15695286 C-T Hetero INTERGENIC
SBS Chr12 10918497 C-T Hetero INTERGENIC
SBS Chr12 10918498 C-T Hetero INTERGENIC
SBS Chr12 12396812 G-A Hetero INTERGENIC
SBS Chr12 18463204 C-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1955001 2015000 59999 13
Deletion Chr7 6497384 6497385 1
Deletion Chr9 7681598 7681708 110
Deletion Chr1 9494610 9494625 15
Deletion Chr12 12611122 12611124 2
Deletion Chr4 14199124 14199129 5
Deletion Chr10 15364506 15364508 2
Deletion Chr2 21376043 21376044 1
Deletion Chr12 21530888 21530889 1
Deletion Chr8 21665723 21665728 5
Deletion Chr5 22557474 22557487 13
Deletion Chr12 26585367 26585387 20
Deletion Chr8 27706793 27706795 2
Deletion Chr4 35786487 35786489 2 OsKitaake04g306000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15935842 15935844 1
Insertion Chr7 12469283 12469286 2
Insertion Chr12 19417744 19417747 2
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5694495 6282577
Inversion Chr1 5771129 6282555
Inversion Chr1 5771139 5827009
Inversion Chr3 16358925 17149703 OsKitaake03g207600
Inversion Chr8 21442995 21635842 OsKitaake08g161500
Inversion Chr8 21442999 21635918 OsKitaake08g161500
Inversion Chr8 21895357 22027101
Inversion Chr1 33302491 33561006 OsKitaake01g340200
Inversion Chr1 33302666 33561008 OsKitaake01g340200

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 13305636 Chr3 16360841
Translocation Chr5 13305671 Chr3 16358944 OsKitaake03g207600
Translocation Chr9 16101639 Chr1 5826941
Translocation Chr9 16101643 Chr1 5826432 OsKitaake01g073608
Translocation Chr3 16360837 Chr1 5826415 OsKitaake01g073608

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11359977	G-T	Homo	INTRON
SBS	Chr1	13804553	A-T	Homo	INTERGENIC
SBS	Chr1	33856937	G-A	Hetero	INTERGENIC
SBS	Chr1	34866076	A-T	Hetero	INTERGENIC
SBS	Chr2	23086	A-T	Hetero	INTRON
SBS	Chr2	4943628	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	8510952	A-C	Hetero	INTERGENIC
SBS	Chr2	8510953	C-A	Hetero	INTERGENIC
SBS	Chr3	4806220	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	4806221	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	6041989	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	15921922	C-G	Hetero	INTERGENIC
SBS	Chr3	18355189	C-T	Hetero	INTERGENIC
SBS	Chr3	18493009	T-C	Hetero	INTERGENIC
SBS	Chr3	21983894	A-G	Hetero	INTERGENIC
SBS	Chr3	26305624	C-G	Homo	INTERGENIC
SBS	Chr4	473133	A-C	Homo	SPLICE_SITE_REGION
SBS	Chr4	8976878	A-T	Hetero	INTERGENIC
SBS	Chr4	13674487	T-C	Homo	INTERGENIC
SBS	Chr4	30990623	G-T	Hetero	INTERGENIC
SBS	Chr4	30990624	C-T	Hetero	INTERGENIC
SBS	Chr4	32054116	C-T	Hetero	INTERGENIC
SBS	Chr4	36092452	G-A	Homo	INTERGENIC
SBS	Chr5	18598206	G-A	Homo	INTERGENIC
SBS	Chr5	24115596	T-C	Homo	INTERGENIC
SBS	Chr6	29632573	T-C	Homo	INTERGENIC
SBS	Chr7	3728562	C-T	Hetero	INTERGENIC
SBS	Chr7	6055864	T-C	Hetero	INTERGENIC
SBS	Chr7	8138984	G-C	Hetero	INTERGENIC
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	22551671	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g192200
SBS	Chr7	24077192	C-A	Hetero	INTERGENIC
SBS	Chr7	24077193	G-A	Hetero	INTERGENIC
SBS	Chr8	10464673	G-T	Homo	INTERGENIC
SBS	Chr8	22135975	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	23886771	C-A	Hetero	INTRON
SBS	Chr8	27264682	G-A	Hetero	INTERGENIC
SBS	Chr9	7354633	G-T	Hetero	INTERGENIC
SBS	Chr9	22525171	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g205900
SBS	Chr10	20903757	G-A	Hetero	INTERGENIC
SBS	Chr11	3558068	G-A	Hetero	INTRON
SBS	Chr11	6498487	T-C	Hetero	INTERGENIC
SBS	Chr11	15695286	C-T	Hetero	INTERGENIC
SBS	Chr12	10918497	C-T	Hetero	INTERGENIC
SBS	Chr12	10918498	C-T	Hetero	INTERGENIC
SBS	Chr12	12396812	G-A	Hetero	INTERGENIC
SBS	Chr12	18463204	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1955001	2015000	59999	13
Deletion	Chr7	6497384	6497385	1
Deletion	Chr9	7681598	7681708	110
Deletion	Chr1	9494610	9494625	15
Deletion	Chr12	12611122	12611124	2
Deletion	Chr4	14199124	14199129	5
Deletion	Chr10	15364506	15364508	2
Deletion	Chr2	21376043	21376044	1
Deletion	Chr12	21530888	21530889	1
Deletion	Chr8	21665723	21665728	5
Deletion	Chr5	22557474	22557487	13
Deletion	Chr12	26585367	26585387	20
Deletion	Chr8	27706793	27706795	2
Deletion	Chr4	35786487	35786489	2	OsKitaake04g306000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5694495	6282577
Inversion	Chr1	5771129	6282555
Inversion	Chr1	5771139	5827009
Inversion	Chr3	16358925	17149703	OsKitaake03g207600
Inversion	Chr8	21442995	21635842	OsKitaake08g161500
Inversion	Chr8	21442999	21635918	OsKitaake08g161500
Inversion	Chr8	21895357	22027101
Inversion	Chr1	33302491	33561006	OsKitaake01g340200
Inversion	Chr1	33302666	33561008	OsKitaake01g340200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes