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Mutant Information

Mutant Name	FN776-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN776-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 17877115 A-G Homo INTERGENIC
SBS Chr2 21625914 A-T Hetero INTERGENIC
SBS Chr3 192452 A-G Hetero INTERGENIC
SBS Chr3 14369486 C-A Hetero INTRON
SBS Chr3 17969438 A-T Homo INTERGENIC
SBS Chr3 17969439 A-T Homo INTERGENIC
SBS Chr3 30915912 A-T Hetero INTERGENIC
SBS Chr3 31224710 G-A Hetero UTR_3_PRIME
SBS Chr4 2597382 T-A Hetero INTERGENIC
SBS Chr4 6275458 A-C Homo INTERGENIC
SBS Chr4 20557785 G-A Hetero INTERGENIC
SBS Chr4 25622172 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g177700
SBS Chr4 34238424 T-C Hetero SPLICE_SITE_REGION
SBS Chr4 34972592 T-C Homo INTERGENIC
SBS Chr5 8226470 G-A Hetero INTERGENIC
SBS Chr5 11181020 T-G Hetero INTERGENIC
SBS Chr5 12009830 T-G Hetero INTERGENIC
SBS Chr5 17207918 G-A Hetero INTERGENIC
SBS Chr6 15698550 A-C Homo INTERGENIC
SBS Chr6 17681399 A-G Homo INTRON
SBS Chr6 25116124 G-A Hetero INTERGENIC
SBS Chr7 4620823 G-C Hetero INTERGENIC
SBS Chr7 20522143 G-A Homo INTERGENIC
SBS Chr8 14550313 A-G Hetero INTRON
SBS Chr8 14903330 G-A Hetero INTERGENIC
SBS Chr8 15353147 T-G Hetero INTERGENIC
SBS Chr9 1004464 C-A Hetero INTERGENIC
SBS Chr9 10531367 G-A Hetero INTERGENIC
SBS Chr9 12409944 C-A Hetero INTERGENIC
SBS Chr10 3330128 T-C Hetero INTERGENIC
SBS Chr10 6327511 G-A Hetero INTERGENIC
SBS Chr11 8922666 C-A Homo INTERGENIC
SBS Chr12 11976586 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g104600
SBS Chr12 12181464 G-A Hetero INTERGENIC
SBS Chr12 18819953 C-T Hetero INTERGENIC
SBS Chr12 19157031 C-T Hetero INTRON

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3187284 3187285 1
Deletion Chr5 7000847 7000856 9
Deletion Chr8 8353839 8353841 2
Deletion Chr9 8808749 8808753 4
Deletion Chr4 11928211 11928221 10
Deletion Chr9 14282365 14282367 2
Deletion Chr9 14985908 14985912 4
Deletion Chr11 15395263 15395276 13
Deletion Chr7 18867700 18867712 12
Deletion Chr6 19856482 19856483 1
Deletion Chr6 20357711 20357713 2
Deletion Chr2 28251065 28251067 2
Deletion Chr7 28701483 28701484 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27223863 27223866 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	17877115	A-G	Homo	INTERGENIC
SBS	Chr2	21625914	A-T	Hetero	INTERGENIC
SBS	Chr3	192452	A-G	Hetero	INTERGENIC
SBS	Chr3	14369486	C-A	Hetero	INTRON
SBS	Chr3	17969438	A-T	Homo	INTERGENIC
SBS	Chr3	17969439	A-T	Homo	INTERGENIC
SBS	Chr3	30915912	A-T	Hetero	INTERGENIC
SBS	Chr3	31224710	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	2597382	T-A	Hetero	INTERGENIC
SBS	Chr4	6275458	A-C	Homo	INTERGENIC
SBS	Chr4	20557785	G-A	Hetero	INTERGENIC
SBS	Chr4	25622172	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g177700
SBS	Chr4	34238424	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr4	34972592	T-C	Homo	INTERGENIC
SBS	Chr5	8226470	G-A	Hetero	INTERGENIC
SBS	Chr5	11181020	T-G	Hetero	INTERGENIC
SBS	Chr5	12009830	T-G	Hetero	INTERGENIC
SBS	Chr5	17207918	G-A	Hetero	INTERGENIC
SBS	Chr6	15698550	A-C	Homo	INTERGENIC
SBS	Chr6	17681399	A-G	Homo	INTRON
SBS	Chr6	25116124	G-A	Hetero	INTERGENIC
SBS	Chr7	4620823	G-C	Hetero	INTERGENIC
SBS	Chr7	20522143	G-A	Homo	INTERGENIC
SBS	Chr8	14550313	A-G	Hetero	INTRON
SBS	Chr8	14903330	G-A	Hetero	INTERGENIC
SBS	Chr8	15353147	T-G	Hetero	INTERGENIC
SBS	Chr9	1004464	C-A	Hetero	INTERGENIC
SBS	Chr9	10531367	G-A	Hetero	INTERGENIC
SBS	Chr9	12409944	C-A	Hetero	INTERGENIC
SBS	Chr10	3330128	T-C	Hetero	INTERGENIC
SBS	Chr10	6327511	G-A	Hetero	INTERGENIC
SBS	Chr11	8922666	C-A	Homo	INTERGENIC
SBS	Chr12	11976586	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g104600
SBS	Chr12	12181464	G-A	Hetero	INTERGENIC
SBS	Chr12	18819953	C-T	Hetero	INTERGENIC
SBS	Chr12	19157031	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3187284	3187285	1
Deletion	Chr5	7000847	7000856	9
Deletion	Chr8	8353839	8353841	2
Deletion	Chr9	8808749	8808753	4
Deletion	Chr4	11928211	11928221	10
Deletion	Chr9	14282365	14282367	2
Deletion	Chr9	14985908	14985912	4
Deletion	Chr11	15395263	15395276	13
Deletion	Chr7	18867700	18867712	12
Deletion	Chr6	19856482	19856483	1
Deletion	Chr6	20357711	20357713	2
Deletion	Chr2	28251065	28251067	2
Deletion	Chr7	28701483	28701484	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes