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| Mutant Information |
|---|
| Mutant Name | FN777-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN777-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10185355 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g128400 |
| SBS | Chr1 | 17370220 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27423761 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g266800 |
| SBS | Chr2 | 7828686 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27115410 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g270900 |
| SBS | Chr2 | 30399789 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28541558 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 860841 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 860842 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 7871837 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 16184179 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 21314490 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 27964476 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g263100 |
| SBS | Chr8 | 245243 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1148063 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20619226 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 762433 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18870699 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 965007 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 1125646 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 1125660 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 24310986 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 6046164 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6919593 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25922261 | C-G | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2550698 | 2550705 | 7 | |
| Deletion | Chr5 | 4827220 | 4827225 | 5 | OsKitaake05g053900 |
| Deletion | Chr6 | 17094611 | 17094612 | 1 | |
| Deletion | Chr1 | 18505356 | 18505362 | 6 | |
| Deletion | Chr6 | 18917599 | 18917600 | 1 | |
| Deletion | Chr7 | 19595435 | 19595452 | 17 | |
| Deletion | Chr4 | 23987422 | 23987435 | 13 | |
| Deletion | Chr11 | 24597427 | 24597430 | 3 | |
| Deletion | Chr6 | 24881001 | 25158000 | 276999 | 20 |
| Deletion | Chr7 | 25139939 | 25139948 | 9 | |
| Deletion | Chr3 | 28658073 | 28658081 | 8 | |
| Deletion | Chr6 | 29809342 | 29809343 | 1 | OsKitaake06g278700 |
| Deletion | Chr3 | 36371796 | 36371798 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 18585047 | 18585049 | 1 | |
| Insertion | Chr12 | 16545651 | 16545655 | 3 |