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Mutant Information

Mutant Name	FN778-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN778-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12346530 T-C Hetero INTERGENIC
SBS Chr1 23681154 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g227300
SBS Chr1 28308362 A-C Homo INTERGENIC
SBS Chr2 2141806 G-T Hetero UTR_5_PRIME
SBS Chr2 16814391 G-A Homo INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 30570405 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g312200
SBS Chr3 32246158 C-T Hetero UTR_3_PRIME
SBS Chr3 32246159 G-T Hetero UTR_3_PRIME
SBS Chr3 32246160 A-T Hetero UTR_3_PRIME
SBS Chr4 3415242 T-A Hetero INTERGENIC
SBS Chr4 6225727 A-T Hetero INTERGENIC
SBS Chr4 6225730 A-T Hetero INTERGENIC
SBS Chr4 14574003 C-T Hetero INTERGENIC
SBS Chr4 15014265 C-A Hetero INTERGENIC
SBS Chr4 29027955 T-G Homo INTERGENIC
SBS Chr4 35077705 T-C Hetero INTERGENIC
SBS Chr4 35077706 C-T Hetero INTERGENIC
SBS Chr5 12332062 G-A Hetero INTERGENIC
SBS Chr6 17453788 G-A Hetero INTERGENIC
SBS Chr6 27757464 A-G Hetero INTRON
SBS Chr7 1565177 A-G Hetero INTERGENIC
SBS Chr7 11616294 G-A Homo INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 22778963 A-T Hetero UTR_5_PRIME
SBS Chr7 23928679 G-C Hetero INTERGENIC
SBS Chr8 22584372 T-A Homo INTRON
SBS Chr8 28230387 C-T Hetero INTERGENIC
SBS Chr9 18321399 C-T Hetero INTERGENIC
SBS Chr9 21035220 G-A Hetero INTERGENIC
SBS Chr10 6292232 C-G Homo INTERGENIC
SBS Chr10 11114975 T-A Hetero INTERGENIC
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 18850030 C-T Hetero INTERGENIC
SBS Chr11 20553540 G-C Hetero INTERGENIC
SBS Chr11 24427656 G-C Hetero INTRON
SBS Chr12 10587643 T-C Homo UTR_3_PRIME
SBS Chr12 22144068 T-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 351552 351563 11
Deletion Chr3 567395 567398 3
Deletion Chr6 1529149 1529173 24
Deletion Chr9 3250001 3272000 21999 2
Deletion Chr8 5134770 5134771 1
Deletion Chr11 5776459 5776465 6
Deletion Chr7 7057848 7057850 2
Deletion Chr5 11238967 11238973 6
Deletion Chr4 14573981 14573991 10
Deletion Chr7 16380696 16380698 2
Deletion Chr4 17102152 17102156 4
Deletion Chr4 18119029 18119031 2
Deletion Chr6 20772504 20772520 16
Deletion Chr7 20878222 20878223 1
Deletion Chr12 23021105 23021108 3
Deletion Chr5 23715974 23715983 9
Deletion Chr12 24503503 24503504 1
Deletion Chr2 26640001 26695000 54999 7
Deletion Chr11 27039778 27039780 2
Deletion Chr1 29236095 29236096 1
Deletion Chr2 29809084 29809093 9
Deletion Chr5 29835879 29835885 6
Deletion Chr2 30571992 30572000 8 OsKitaake02g312200
Deletion Chr2 31676658 31676662 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 6312837 6312840 2
Insertion Chr9 3552850 3552852 1
Insertion Chr9 19668113 19668116 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 3221113 Chr1 25099104
Translocation Chr2 3221121 Chr1 25029616 OsKitaake01g242200
Translocation Chr7 23869874 Chr5 437395 OsKitaake05g005833
Translocation Chr7 23869886 Chr3 18183881 OsKitaake03g221800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12346530	T-C	Hetero	INTERGENIC
SBS	Chr1	23681154	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g227300
SBS	Chr1	28308362	A-C	Homo	INTERGENIC
SBS	Chr2	2141806	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	16814391	G-A	Homo	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	30570405	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g312200
SBS	Chr3	32246158	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	32246159	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	32246160	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	3415242	T-A	Hetero	INTERGENIC
SBS	Chr4	6225727	A-T	Hetero	INTERGENIC
SBS	Chr4	6225730	A-T	Hetero	INTERGENIC
SBS	Chr4	14574003	C-T	Hetero	INTERGENIC
SBS	Chr4	15014265	C-A	Hetero	INTERGENIC
SBS	Chr4	29027955	T-G	Homo	INTERGENIC
SBS	Chr4	35077705	T-C	Hetero	INTERGENIC
SBS	Chr4	35077706	C-T	Hetero	INTERGENIC
SBS	Chr5	12332062	G-A	Hetero	INTERGENIC
SBS	Chr6	17453788	G-A	Hetero	INTERGENIC
SBS	Chr6	27757464	A-G	Hetero	INTRON
SBS	Chr7	1565177	A-G	Hetero	INTERGENIC
SBS	Chr7	11616294	G-A	Homo	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	22778963	A-T	Hetero	UTR_5_PRIME
SBS	Chr7	23928679	G-C	Hetero	INTERGENIC
SBS	Chr8	22584372	T-A	Homo	INTRON
SBS	Chr8	28230387	C-T	Hetero	INTERGENIC
SBS	Chr9	18321399	C-T	Hetero	INTERGENIC
SBS	Chr9	21035220	G-A	Hetero	INTERGENIC
SBS	Chr10	6292232	C-G	Homo	INTERGENIC
SBS	Chr10	11114975	T-A	Hetero	INTERGENIC
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	18850030	C-T	Hetero	INTERGENIC
SBS	Chr11	20553540	G-C	Hetero	INTERGENIC
SBS	Chr11	24427656	G-C	Hetero	INTRON
SBS	Chr12	10587643	T-C	Homo	UTR_3_PRIME
SBS	Chr12	22144068	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	351552	351563	11
Deletion	Chr3	567395	567398	3
Deletion	Chr6	1529149	1529173	24
Deletion	Chr9	3250001	3272000	21999	2
Deletion	Chr8	5134770	5134771	1
Deletion	Chr11	5776459	5776465	6
Deletion	Chr7	7057848	7057850	2
Deletion	Chr5	11238967	11238973	6
Deletion	Chr4	14573981	14573991	10
Deletion	Chr7	16380696	16380698	2
Deletion	Chr4	17102152	17102156	4
Deletion	Chr4	18119029	18119031	2
Deletion	Chr6	20772504	20772520	16
Deletion	Chr7	20878222	20878223	1
Deletion	Chr12	23021105	23021108	3
Deletion	Chr5	23715974	23715983	9
Deletion	Chr12	24503503	24503504	1
Deletion	Chr2	26640001	26695000	54999	7
Deletion	Chr11	27039778	27039780	2
Deletion	Chr1	29236095	29236096	1
Deletion	Chr2	29809084	29809093	9
Deletion	Chr5	29835879	29835885	6
Deletion	Chr2	30571992	30572000	8	OsKitaake02g312200
Deletion	Chr2	31676658	31676662	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	3221113	Chr1	25099104
Translocation	Chr2	3221121	Chr1	25029616	OsKitaake01g242200
Translocation	Chr7	23869874	Chr5	437395	OsKitaake05g005833
Translocation	Chr7	23869886	Chr3	18183881	OsKitaake03g221800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes