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| Mutant Information |
|---|
| Mutant Name | FN779-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN779-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14262458 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 21719253 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24220160 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 28259889 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 28462666 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 34459288 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 9765935 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11938054 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21388076 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 35857053 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 7836715 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11268904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 15091417 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 37435071 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4354900 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4859911 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9029861 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 14219610 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g109000 |
| SBS | Chr5 | 28348096 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14126515 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26150095 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 30686863 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g289800 |
| SBS | Chr7 | 2428088 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3277655 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7094700 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 9793931 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 14591699 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 8922190 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 7039249 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 6938321 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7354629 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18075959 | A-T | Hetero | INTERGENIC |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2437710 | 2437712 | 2 | |
| Deletion | Chr3 | 2820203 | 2820210 | 7 | |
| Deletion | Chr9 | 4595608 | 4595613 | 5 | |
| Deletion | Chr11 | 6311542 | 6311547 | 5 | |
| Deletion | Chr2 | 6723001 | 6756000 | 32999 | 6 |
| Deletion | Chr8 | 7094797 | 7094800 | 3 | |
| Deletion | Chr11 | 10656530 | 10656531 | 1 | OsKitaake11g105100 |
| Deletion | Chr12 | 12456060 | 12456061 | 1 | |
| Deletion | Chr1 | 14418001 | 14587000 | 168999 | 15 |
| Deletion | Chr5 | 16297975 | 16297976 | 1 | OsKitaake05g124500 |
| Deletion | Chr7 | 17725915 | 17725925 | 10 | |
| Deletion | Chr6 | 17756237 | 17756241 | 4 | |
| Deletion | Chr4 | 19772127 | 19772130 | 3 | |
| Deletion | Chr12 | 20401858 | 20401859 | 1 | |
| Deletion | Chr9 | 20888252 | 20888260 | 8 | |
| Deletion | Chr11 | 21333629 | 21333630 | 1 | |
| Deletion | Chr7 | 24001327 | 24001329 | 2 | |
| Deletion | Chr4 | 26170960 | 26170961 | 1 | OsKitaake04g185300 |
| Deletion | Chr4 | 26954526 | 26954539 | 13 | OsKitaake04g195600 |
| Deletion | Chr2 | 35649027 | 35649030 | 3 | |
| Deletion | Chr3 | 36895982 | 36895993 | 11 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 1263381 | 1263384 | 2 | |
| Insertion | Chr2 | 8493493 | 8493496 | 2 | |
| Insertion | Chr7 | 28157969 | 28157971 | 1 | |
| Insertion | Chr11 | 14625648 | 14625651 | 2 |