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Mutant Information

Mutant Name	FN780-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN780-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1625196 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g019800
SBS Chr1 5358714 T-G Hetero INTERGENIC
SBS Chr2 1467839 A-G Hetero INTRON
SBS Chr2 1936762 C-T Hetero INTERGENIC
SBS Chr2 3557585 T-G Hetero INTERGENIC
SBS Chr2 36819330 T-A Hetero INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr5 25386710 G-A Hetero INTERGENIC
SBS Chr6 441455 T-G Hetero SYNONYMOUS_CODING
SBS Chr6 3228287 G-A Hetero INTERGENIC
SBS Chr6 3431933 G-A Hetero INTRON
SBS Chr6 3758770 T-A Hetero INTERGENIC
SBS Chr6 22159449 T-A Hetero INTRON
SBS Chr6 29868019 T-G Hetero INTRON
SBS Chr7 312062 G-A Homo INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 2650788 C-A Hetero INTERGENIC
SBS Chr7 9307807 G-C Hetero INTERGENIC
SBS Chr8 3980206 G-A Hetero INTERGENIC
SBS Chr9 696890 C-T Hetero INTERGENIC
SBS Chr9 5304640 C-T Hetero INTERGENIC
SBS Chr9 5304641 A-T Hetero INTERGENIC
SBS Chr9 12635832 A-G Hetero INTERGENIC
SBS Chr10 4223626 T-C Hetero INTERGENIC
SBS Chr10 9032605 A-G Hetero INTERGENIC
SBS Chr10 11161741 C-T Hetero INTERGENIC
SBS Chr10 13659508 C-T Hetero INTERGENIC
SBS Chr11 5391321 A-T Homo INTERGENIC
SBS Chr11 8392803 T-A Homo INTERGENIC
SBS Chr11 13206365 C-A Hetero INTERGENIC
SBS Chr11 14799127 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g122500
SBS Chr11 17823694 G-A Hetero INTERGENIC
SBS Chr11 27899588 C-G Homo INTERGENIC
SBS Chr12 17282459 T-C Hetero INTRON
SBS Chr12 17928145 T-A Hetero INTERGENIC
SBS Chr12 18545579 A-T Hetero INTRON
SBS Chr12 23567448 A-G Hetero INTERGENIC
SBS Chr12 23627918 G-C Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4284643 4284644 1 OsKitaake08g048400
Deletion Chr10 5935366 5935367 1
Deletion Chr2 8008893 8008894 1
Deletion Chr4 8391736 8391739 3
Deletion Chr9 9145195 9145202 7
Deletion Chr1 9724268 9724269 1
Deletion Chr9 11882278 11882280 2
Deletion Chr8 14385486 14385496 10
Deletion Chr11 14633001 14728000 94999 3
Deletion Chr11 14732001 15321000 588999 22
Deletion Chr3 18271764 18271766 2
Deletion Chr4 19795193 19795203 10
Deletion Chr5 22070592 22070596 4
Deletion Chr9 22108001 22295000 186999 30
Deletion Chr9 22297001 22436000 138999 22
Deletion Chr4 24947001 24998000 50999 7
Deletion Chr11 25191739 25191746 7
Deletion Chr5 26804995 26805003 8
Deletion Chr3 27209224 27209225 1
Deletion Chr7 28166681 28166683 2
Deletion Chr1 42231638 42231646 8

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 3819407 3873856 OsKitaake08g045001

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 22108710 Chr7 28847012 OsKitaake07g275300
Translocation Chr9 22440677 Chr7 28844946 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1625196	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g019800
SBS	Chr1	5358714	T-G	Hetero	INTERGENIC
SBS	Chr2	1467839	A-G	Hetero	INTRON
SBS	Chr2	1936762	C-T	Hetero	INTERGENIC
SBS	Chr2	3557585	T-G	Hetero	INTERGENIC
SBS	Chr2	36819330	T-A	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr5	25386710	G-A	Hetero	INTERGENIC
SBS	Chr6	441455	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	3228287	G-A	Hetero	INTERGENIC
SBS	Chr6	3431933	G-A	Hetero	INTRON
SBS	Chr6	3758770	T-A	Hetero	INTERGENIC
SBS	Chr6	22159449	T-A	Hetero	INTRON
SBS	Chr6	29868019	T-G	Hetero	INTRON
SBS	Chr7	312062	G-A	Homo	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	2650788	C-A	Hetero	INTERGENIC
SBS	Chr7	9307807	G-C	Hetero	INTERGENIC
SBS	Chr8	3980206	G-A	Hetero	INTERGENIC
SBS	Chr9	696890	C-T	Hetero	INTERGENIC
SBS	Chr9	5304640	C-T	Hetero	INTERGENIC
SBS	Chr9	5304641	A-T	Hetero	INTERGENIC
SBS	Chr9	12635832	A-G	Hetero	INTERGENIC
SBS	Chr10	4223626	T-C	Hetero	INTERGENIC
SBS	Chr10	9032605	A-G	Hetero	INTERGENIC
SBS	Chr10	11161741	C-T	Hetero	INTERGENIC
SBS	Chr10	13659508	C-T	Hetero	INTERGENIC
SBS	Chr11	5391321	A-T	Homo	INTERGENIC
SBS	Chr11	8392803	T-A	Homo	INTERGENIC
SBS	Chr11	13206365	C-A	Hetero	INTERGENIC
SBS	Chr11	14799127	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g122500
SBS	Chr11	17823694	G-A	Hetero	INTERGENIC
SBS	Chr11	27899588	C-G	Homo	INTERGENIC
SBS	Chr12	17282459	T-C	Hetero	INTRON
SBS	Chr12	17928145	T-A	Hetero	INTERGENIC
SBS	Chr12	18545579	A-T	Hetero	INTRON
SBS	Chr12	23567448	A-G	Hetero	INTERGENIC
SBS	Chr12	23627918	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4284643	4284644	1	OsKitaake08g048400
Deletion	Chr10	5935366	5935367	1
Deletion	Chr2	8008893	8008894	1
Deletion	Chr4	8391736	8391739	3
Deletion	Chr9	9145195	9145202	7
Deletion	Chr1	9724268	9724269	1
Deletion	Chr9	11882278	11882280	2
Deletion	Chr8	14385486	14385496	10
Deletion	Chr11	14633001	14728000	94999	3
Deletion	Chr11	14732001	15321000	588999	22
Deletion	Chr3	18271764	18271766	2
Deletion	Chr4	19795193	19795203	10
Deletion	Chr5	22070592	22070596	4
Deletion	Chr9	22108001	22295000	186999	30
Deletion	Chr9	22297001	22436000	138999	22
Deletion	Chr4	24947001	24998000	50999	7
Deletion	Chr11	25191739	25191746	7
Deletion	Chr5	26804995	26805003	8
Deletion	Chr3	27209224	27209225	1
Deletion	Chr7	28166681	28166683	2
Deletion	Chr1	42231638	42231646	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3819407	3873856	OsKitaake08g045001

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes