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Mutant Information

Mutant Name	FN781-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN781-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8601645 C-T Hetero INTERGENIC
SBS Chr1 15169185 C-A Hetero INTERGENIC
SBS Chr1 21956666 C-T Homo INTRON
SBS Chr1 23982700 G-A Hetero INTERGENIC
SBS Chr1 27138304 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g263900
SBS Chr2 9285438 C-A Hetero INTERGENIC
SBS Chr2 9348592 G-A Hetero INTERGENIC
SBS Chr2 11786009 G-C Hetero INTRON
SBS Chr3 2276388 A-T Hetero INTERGENIC
SBS Chr3 9617968 G-T Hetero UTR_5_PRIME
SBS Chr3 18277974 C-T Hetero INTERGENIC
SBS Chr3 26111418 C-T Hetero INTERGENIC
SBS Chr4 769755 T-G Hetero INTERGENIC
SBS Chr4 3465909 A-G Homo INTERGENIC
SBS Chr4 11488177 A-G Hetero INTERGENIC
SBS Chr4 17934561 C-A Hetero INTERGENIC
SBS Chr4 17934562 G-A Hetero INTERGENIC
SBS Chr4 17934563 C-A Hetero INTERGENIC
SBS Chr4 28957847 G-A Hetero INTERGENIC
SBS Chr4 36530125 A-T Hetero INTERGENIC
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr5 26565464 T-C Hetero INTERGENIC
SBS Chr6 30765371 T-C Homo INTRON
SBS Chr7 6277993 T-A Homo INTERGENIC
SBS Chr8 6255264 G-T Hetero INTERGENIC
SBS Chr8 9550588 G-A Hetero INTERGENIC
SBS Chr9 18104206 C-A Hetero INTRON
SBS Chr10 11742428 G-A Homo INTERGENIC
SBS Chr11 8016381 T-G Homo INTERGENIC
SBS Chr11 8016382 G-A Homo INTERGENIC
SBS Chr11 8016383 C-A Homo INTERGENIC
SBS Chr12 12192348 A-G Hetero INTERGENIC
SBS Chr12 14373225 G-A Hetero INTERGENIC
SBS Chr12 15872212 C-G Hetero INTERGENIC
SBS Chr12 18912971 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr4 1223584 1223589 5
Deletion Chr8 6241562 6241563 1
Deletion Chr7 9729280 9729281 1
Deletion Chr1 9943830 9944012 182
Deletion Chr11 12521222 12521707 485
Deletion Chr1 15801172 15801175 3
Deletion Chr4 17191569 17191572 3
Deletion Chr4 17314186 17314188 2
Deletion Chr12 25231564 25231573 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40187398 40187401 2
Insertion Chr2 21226792 21226795 2
Insertion Chr8 20993333 20993336 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25175822 Chr4 31754759
Translocation Chr12 25175834 Chr4 31749115
Translocation Chr12 27126062 Chr11 7191082 OsKitaake12g228500
Translocation Chr12 27126081 Chr11 7190122 OsKitaake12g228500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8601645	C-T	Hetero	INTERGENIC
SBS	Chr1	15169185	C-A	Hetero	INTERGENIC
SBS	Chr1	21956666	C-T	Homo	INTRON
SBS	Chr1	23982700	G-A	Hetero	INTERGENIC
SBS	Chr1	27138304	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g263900
SBS	Chr2	9285438	C-A	Hetero	INTERGENIC
SBS	Chr2	9348592	G-A	Hetero	INTERGENIC
SBS	Chr2	11786009	G-C	Hetero	INTRON
SBS	Chr3	2276388	A-T	Hetero	INTERGENIC
SBS	Chr3	9617968	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	18277974	C-T	Hetero	INTERGENIC
SBS	Chr3	26111418	C-T	Hetero	INTERGENIC
SBS	Chr4	769755	T-G	Hetero	INTERGENIC
SBS	Chr4	3465909	A-G	Homo	INTERGENIC
SBS	Chr4	11488177	A-G	Hetero	INTERGENIC
SBS	Chr4	17934561	C-A	Hetero	INTERGENIC
SBS	Chr4	17934562	G-A	Hetero	INTERGENIC
SBS	Chr4	17934563	C-A	Hetero	INTERGENIC
SBS	Chr4	28957847	G-A	Hetero	INTERGENIC
SBS	Chr4	36530125	A-T	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr5	26565464	T-C	Hetero	INTERGENIC
SBS	Chr6	30765371	T-C	Homo	INTRON
SBS	Chr7	6277993	T-A	Homo	INTERGENIC
SBS	Chr8	6255264	G-T	Hetero	INTERGENIC
SBS	Chr8	9550588	G-A	Hetero	INTERGENIC
SBS	Chr9	18104206	C-A	Hetero	INTRON
SBS	Chr10	11742428	G-A	Homo	INTERGENIC
SBS	Chr11	8016381	T-G	Homo	INTERGENIC
SBS	Chr11	8016382	G-A	Homo	INTERGENIC
SBS	Chr11	8016383	C-A	Homo	INTERGENIC
SBS	Chr12	12192348	A-G	Hetero	INTERGENIC
SBS	Chr12	14373225	G-A	Hetero	INTERGENIC
SBS	Chr12	15872212	C-G	Hetero	INTERGENIC
SBS	Chr12	18912971	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr4	1223584	1223589	5
Deletion	Chr8	6241562	6241563	1
Deletion	Chr7	9729280	9729281	1
Deletion	Chr1	9943830	9944012	182
Deletion	Chr11	12521222	12521707	485
Deletion	Chr1	15801172	15801175	3
Deletion	Chr4	17191569	17191572	3
Deletion	Chr4	17314186	17314188	2
Deletion	Chr12	25231564	25231573	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	25175822	Chr4	31754759
Translocation	Chr12	25175834	Chr4	31749115
Translocation	Chr12	27126062	Chr11	7191082	OsKitaake12g228500
Translocation	Chr12	27126081	Chr11	7190122	OsKitaake12g228500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes