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Mutant Information

Mutant Name	FN782-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN782-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3871546 G-A Hetero INTERGENIC
SBS Chr1 28932137 C-T Homo INTRON
SBS Chr1 41949490 A-G Homo INTRON
SBS Chr2 29930422 G-C Homo INTERGENIC
SBS Chr3 10904897 G-A Homo INTERGENIC
SBS Chr3 26760935 A-T Homo INTERGENIC
SBS Chr3 27522329 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 7750752 T-C Homo INTERGENIC
SBS Chr4 14220431 T-G Homo INTERGENIC
SBS Chr4 34660639 A-G Hetero INTERGENIC
SBS Chr5 11016665 T-C Hetero INTERGENIC
SBS Chr5 12276158 C-G Hetero INTERGENIC
SBS Chr5 19413071 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g152600
SBS Chr5 29032073 C-A Homo INTERGENIC
SBS Chr5 29032078 G-A Homo INTERGENIC
SBS Chr5 29032079 C-A Homo INTERGENIC
SBS Chr6 1749891 T-A Hetero INTERGENIC
SBS Chr6 1903593 T-G Hetero UTR_3_PRIME
SBS Chr6 1903605 G-T Hetero UTR_3_PRIME
SBS Chr6 5698017 G-A Hetero UTR_3_PRIME
SBS Chr6 14801616 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 24124575 G-C Hetero INTRON
SBS Chr7 18734218 T-C Hetero INTRON
SBS Chr8 5984742 C-G Hetero INTERGENIC
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 16577160 G-A Hetero INTERGENIC
SBS Chr8 21912953 T-A Hetero INTRON
SBS Chr9 7961558 G-C Hetero INTERGENIC
SBS Chr9 8814315 A-G Homo INTERGENIC
SBS Chr9 21033150 G-A Homo UTR_3_PRIME
SBS Chr10 14167390 G-A Hetero INTERGENIC
SBS Chr11 8837892 T-C Hetero INTERGENIC
SBS Chr11 20937860 C-T Hetero INTERGENIC
SBS Chr12 14359932 G-A Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1158629 1158632 3
Deletion Chr3 2045952 2045953 1 OsKitaake03g029300
Deletion Chr11 2732120 2732126 6
Deletion Chr8 4679744 4679752 8 OsKitaake08g053150
Deletion Chr1 4794078 4794079 1
Deletion Chr1 5976402 5976403 1
Deletion Chr3 7364851 7364854 3
Deletion Chr11 10490001 10531000 40999 5
Deletion Chr11 10536001 10791000 254999 12
Deletion Chr6 10636524 10636624 100 OsKitaake06g119501
Deletion Chr11 10814001 10956000 141999 4
Deletion Chr9 11725633 11725635 2
Deletion Chr8 12693021 12693025 4
Deletion Chr7 16438281 16438282 1
Deletion Chr9 17746063 17746064 1
Deletion Chr4 22061119 22061125 6
Deletion Chr3 23706518 23706520 2
Deletion Chr4 28428248 28428256 8
Deletion Chr1 35740556 35740564 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 12464015 12464017 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 8623597 8630195
Inversion Chr6 8623605 8630853
Inversion Chr11 10494311 10818218 OsKitaake11g104400
Inversion Chr11 10790360 10959211

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 22116672 Chr7 19076947
Translocation Chr9 22116949 Chr7 19076952

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3871546	G-A	Hetero	INTERGENIC
SBS	Chr1	28932137	C-T	Homo	INTRON
SBS	Chr1	41949490	A-G	Homo	INTRON
SBS	Chr2	29930422	G-C	Homo	INTERGENIC
SBS	Chr3	10904897	G-A	Homo	INTERGENIC
SBS	Chr3	26760935	A-T	Homo	INTERGENIC
SBS	Chr3	27522329	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	7750752	T-C	Homo	INTERGENIC
SBS	Chr4	14220431	T-G	Homo	INTERGENIC
SBS	Chr4	34660639	A-G	Hetero	INTERGENIC
SBS	Chr5	11016665	T-C	Hetero	INTERGENIC
SBS	Chr5	12276158	C-G	Hetero	INTERGENIC
SBS	Chr5	19413071	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g152600
SBS	Chr5	29032073	C-A	Homo	INTERGENIC
SBS	Chr5	29032078	G-A	Homo	INTERGENIC
SBS	Chr5	29032079	C-A	Homo	INTERGENIC
SBS	Chr6	1749891	T-A	Hetero	INTERGENIC
SBS	Chr6	1903593	T-G	Hetero	UTR_3_PRIME
SBS	Chr6	1903605	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	5698017	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	14801616	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	24124575	G-C	Hetero	INTRON
SBS	Chr7	18734218	T-C	Hetero	INTRON
SBS	Chr8	5984742	C-G	Hetero	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	16577160	G-A	Hetero	INTERGENIC
SBS	Chr8	21912953	T-A	Hetero	INTRON
SBS	Chr9	7961558	G-C	Hetero	INTERGENIC
SBS	Chr9	8814315	A-G	Homo	INTERGENIC
SBS	Chr9	21033150	G-A	Homo	UTR_3_PRIME
SBS	Chr10	14167390	G-A	Hetero	INTERGENIC
SBS	Chr11	8837892	T-C	Hetero	INTERGENIC
SBS	Chr11	20937860	C-T	Hetero	INTERGENIC
SBS	Chr12	14359932	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1158629	1158632	3
Deletion	Chr3	2045952	2045953	1	OsKitaake03g029300
Deletion	Chr11	2732120	2732126	6
Deletion	Chr8	4679744	4679752	8	OsKitaake08g053150
Deletion	Chr1	4794078	4794079	1
Deletion	Chr1	5976402	5976403	1
Deletion	Chr3	7364851	7364854	3
Deletion	Chr11	10490001	10531000	40999	5
Deletion	Chr11	10536001	10791000	254999	12
Deletion	Chr6	10636524	10636624	100	OsKitaake06g119501
Deletion	Chr11	10814001	10956000	141999	4
Deletion	Chr9	11725633	11725635	2
Deletion	Chr8	12693021	12693025	4
Deletion	Chr7	16438281	16438282	1
Deletion	Chr9	17746063	17746064	1
Deletion	Chr4	22061119	22061125	6
Deletion	Chr3	23706518	23706520	2
Deletion	Chr4	28428248	28428256	8
Deletion	Chr1	35740556	35740564	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8623597	8630195
Inversion	Chr6	8623605	8630853
Inversion	Chr11	10494311	10818218	OsKitaake11g104400
Inversion	Chr11	10790360	10959211

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes