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Mutant Information

Mutant Name	FN784-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN784-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18254930 C-T Hetero INTERGENIC
SBS Chr1 23847179 G-A Hetero INTERGENIC
SBS Chr2 4783684 T-C Hetero INTRON
SBS Chr2 25696891 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g254100
SBS Chr3 3108197 A-C Hetero INTERGENIC
SBS Chr3 22030033 G-T Hetero INTERGENIC
SBS Chr3 32500983 T-A Hetero INTERGENIC
SBS Chr4 8296992 G-A Hetero INTRON
SBS Chr4 9792384 G-C Homo INTERGENIC
SBS Chr4 15247843 G-A Homo INTERGENIC
SBS Chr4 27635330 A-G Homo UTR_5_PRIME
SBS Chr4 35635689 G-T Hetero INTRON
SBS Chr5 4347487 C-T Homo INTERGENIC
SBS Chr5 9019970 C-A Hetero INTERGENIC
SBS Chr5 22801407 T-G Hetero INTERGENIC
SBS Chr5 28892805 G-A Hetero INTERGENIC
SBS Chr6 1073899 G-A Hetero INTERGENIC
SBS Chr6 27096197 T-A Hetero INTRON
SBS Chr7 1640253 A-T Hetero UTR_3_PRIME
SBS Chr7 19693298 A-G Homo INTERGENIC
SBS Chr10 6425253 C-A Homo INTERGENIC
SBS Chr10 9510060 A-C Homo INTERGENIC
SBS Chr10 19472822 C-T Homo UTR_5_PRIME
SBS Chr11 16434459 G-A Homo INTERGENIC
SBS Chr12 14899863 G-A Homo INTERGENIC
SBS Chr12 23316706 T-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2836958 2836966 8
Deletion Chr5 5731615 5731616 1
Deletion Chr7 6987445 6987447 2
Deletion Chr5 7627001 7677000 49999 6
Deletion Chr1 34651906 34651907 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18357589 18770541 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18254930	C-T	Hetero	INTERGENIC
SBS	Chr1	23847179	G-A	Hetero	INTERGENIC
SBS	Chr2	4783684	T-C	Hetero	INTRON
SBS	Chr2	25696891	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g254100
SBS	Chr3	3108197	A-C	Hetero	INTERGENIC
SBS	Chr3	22030033	G-T	Hetero	INTERGENIC
SBS	Chr3	32500983	T-A	Hetero	INTERGENIC
SBS	Chr4	8296992	G-A	Hetero	INTRON
SBS	Chr4	9792384	G-C	Homo	INTERGENIC
SBS	Chr4	15247843	G-A	Homo	INTERGENIC
SBS	Chr4	27635330	A-G	Homo	UTR_5_PRIME
SBS	Chr4	35635689	G-T	Hetero	INTRON
SBS	Chr5	4347487	C-T	Homo	INTERGENIC
SBS	Chr5	9019970	C-A	Hetero	INTERGENIC
SBS	Chr5	22801407	T-G	Hetero	INTERGENIC
SBS	Chr5	28892805	G-A	Hetero	INTERGENIC
SBS	Chr6	1073899	G-A	Hetero	INTERGENIC
SBS	Chr6	27096197	T-A	Hetero	INTRON
SBS	Chr7	1640253	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	19693298	A-G	Homo	INTERGENIC
SBS	Chr10	6425253	C-A	Homo	INTERGENIC
SBS	Chr10	9510060	A-C	Homo	INTERGENIC
SBS	Chr10	19472822	C-T	Homo	UTR_5_PRIME
SBS	Chr11	16434459	G-A	Homo	INTERGENIC
SBS	Chr12	14899863	G-A	Homo	INTERGENIC
SBS	Chr12	23316706	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2836958	2836966	8
Deletion	Chr5	5731615	5731616	1
Deletion	Chr7	6987445	6987447	2
Deletion	Chr5	7627001	7677000	49999	6
Deletion	Chr1	34651906	34651907	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18357589	18770541	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes