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| Mutant Information |
|---|
| Mutant Name | FN785-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN785-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12310576 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16397454 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36529766 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 7016812 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33384340 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 5185170 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8441391 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18220055 | T-C | Homo | INTRON | |
| SBS | Chr3 | 22442274 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18201618 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36761166 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g320400 |
| SBS | Chr5 | 14318851 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18990561 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27356077 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g247800 |
| SBS | Chr6 | 19138476 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23539419 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 16150988 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 16616706 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18765954 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24026889 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28262568 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 22643401 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 8048287 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 14599726 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9855018 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11577172 | A-T | Homo | INTRON | |
| SBS | Chr11 | 19483821 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19483824 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5848449 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g070500 |
| SBS | Chr12 | 13058651 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 13388268 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 23971538 | T-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 88291 | 88645 | 354 | |
| Deletion | Chr1 | 5258055 | 5258065 | 10 | |
| Deletion | Chr2 | 6151285 | 6151294 | 9 | |
| Deletion | Chr6 | 6673001 | 6689000 | 15999 | OsKitaake06g087300 |
| Deletion | Chr2 | 8861658 | 8861660 | 2 | |
| Deletion | Chr11 | 9854714 | 9854716 | 2 | |
| Deletion | Chr11 | 11577244 | 11577249 | 5 | |
| Deletion | Chr5 | 15257997 | 15257999 | 2 | |
| Deletion | Chr1 | 18671900 | 18671904 | 4 | |
| Deletion | Chr5 | 19306584 | 19306585 | 1 | |
| Deletion | Chr7 | 21285009 | 21285013 | 4 | |
| Deletion | Chr12 | 21681001 | 21703000 | 21999 | 4 |
| Deletion | Chr5 | 28766028 | 28766029 | 1 | OsKitaake05g270200 |
| Deletion | Chr4 | 31762057 | 31762072 | 15 | OsKitaake04g251600 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 15596263 | 15596266 | 2 | |
| Insertion | Chr3 | 31662403 | 31662406 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 11250199 | Chr7 | 17493230 | |
| Translocation | Chr9 | 11251622 | Chr7 | 17493254 |