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Mutant Information

Mutant Name	FN786-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN786-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8451207 A-G Hetero INTERGENIC
SBS Chr1 16182733 G-A Homo INTERGENIC
SBS Chr1 18775409 T-A Hetero INTERGENIC
SBS Chr1 18775410 C-T Homo INTERGENIC
SBS Chr1 20790334 C-T Homo INTERGENIC
SBS Chr1 26929070 A-G Homo INTERGENIC
SBS Chr2 10948724 A-G Hetero INTERGENIC
SBS Chr2 11626995 T-A Homo INTERGENIC
SBS Chr2 18588628 G-A Hetero INTERGENIC
SBS Chr2 21483391 A-G Hetero UTR_3_PRIME
SBS Chr2 24083228 A-C Hetero INTERGENIC
SBS Chr2 35990355 G-C Homo INTERGENIC
SBS Chr4 5471419 C-A Homo INTERGENIC
SBS Chr4 7091263 T-C Hetero INTERGENIC
SBS Chr4 12807986 C-T Hetero INTERGENIC
SBS Chr4 21387891 A-T Hetero INTERGENIC
SBS Chr5 6665586 G-T Hetero INTERGENIC
SBS Chr5 7114834 T-C Hetero INTERGENIC
SBS Chr5 8482551 C-A Hetero INTERGENIC
SBS Chr5 10746804 C-T Hetero INTERGENIC
SBS Chr5 16406260 C-T Hetero INTERGENIC
SBS Chr5 29555786 G-A Hetero INTERGENIC
SBS Chr5 29555787 T-A Hetero INTERGENIC
SBS Chr6 278933 G-A Hetero INTERGENIC
SBS Chr6 17530005 T-C Hetero INTERGENIC
SBS Chr6 30235575 C-T Hetero INTERGENIC
SBS Chr7 12060766 G-A Hetero INTERGENIC
SBS Chr7 14677777 C-T Hetero INTERGENIC
SBS Chr7 21949458 C-T Homo INTERGENIC
SBS Chr7 24460914 G-A Hetero INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr10 17854098 G-A Hetero INTRON
SBS Chr10 19622071 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g144900
SBS Chr11 7625383 C-T Hetero INTERGENIC
SBS Chr11 11632265 T-C Homo INTERGENIC
SBS Chr11 12330703 C-T Homo INTERGENIC
SBS Chr11 12448523 G-C Homo INTERGENIC
SBS Chr11 28025009 G-A Homo INTERGENIC
SBS Chr12 12897474 C-G Hetero INTERGENIC
SBS Chr12 26007075 A-G Hetero INTERGENIC
SBS Chr12 26863797 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 203352 203358 6 OsKitaake05g002500
Deletion Chr4 487315 487317 2
Deletion Chr11 736001 749000 12999 2
Deletion Chr8 1643784 1643796 12
Deletion Chr12 4039561 4039571 10
Deletion Chr12 4552262 4552273 11
Deletion Chr5 6702001 6720000 17999 2
Deletion Chr11 7559420 7559424 4 OsKitaake11g085000
Deletion Chr1 8479001 8488000 8999 OsKitaake01g105900
Deletion Chr9 8801392 8801396 4
Deletion Chr1 11531001 11604000 72999 6
Deletion Chr6 13231001 13249000 17999 OsKitaake06g139700
Deletion Chr10 18583990 18583992 2
Deletion Chr3 21388268 21388276 8
Deletion Chr11 22997957 22997980 23
Deletion Chr11 27114733 27114736 3
Deletion Chr5 29074558 29074562 4
Deletion Chr11 29600268 29600270 2
Deletion Chr3 30895745 30895757 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 11867572 11867575 2
Insertion Chr12 3915185 3915190 4

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6700586 6736535
Inversion Chr5 6719196 6737523
Inversion Chr12 21789937 22744144 OsKitaake12g179500
Inversion Chr12 22688292 22744012 OsKitaake12g179500
Inversion Chr1 31102274 31273085
Inversion Chr1 31102283 31273093

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8451207	A-G	Hetero	INTERGENIC
SBS	Chr1	16182733	G-A	Homo	INTERGENIC
SBS	Chr1	18775409	T-A	Hetero	INTERGENIC
SBS	Chr1	18775410	C-T	Homo	INTERGENIC
SBS	Chr1	20790334	C-T	Homo	INTERGENIC
SBS	Chr1	26929070	A-G	Homo	INTERGENIC
SBS	Chr2	10948724	A-G	Hetero	INTERGENIC
SBS	Chr2	11626995	T-A	Homo	INTERGENIC
SBS	Chr2	18588628	G-A	Hetero	INTERGENIC
SBS	Chr2	21483391	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	24083228	A-C	Hetero	INTERGENIC
SBS	Chr2	35990355	G-C	Homo	INTERGENIC
SBS	Chr4	5471419	C-A	Homo	INTERGENIC
SBS	Chr4	7091263	T-C	Hetero	INTERGENIC
SBS	Chr4	12807986	C-T	Hetero	INTERGENIC
SBS	Chr4	21387891	A-T	Hetero	INTERGENIC
SBS	Chr5	6665586	G-T	Hetero	INTERGENIC
SBS	Chr5	7114834	T-C	Hetero	INTERGENIC
SBS	Chr5	8482551	C-A	Hetero	INTERGENIC
SBS	Chr5	10746804	C-T	Hetero	INTERGENIC
SBS	Chr5	16406260	C-T	Hetero	INTERGENIC
SBS	Chr5	29555786	G-A	Hetero	INTERGENIC
SBS	Chr5	29555787	T-A	Hetero	INTERGENIC
SBS	Chr6	278933	G-A	Hetero	INTERGENIC
SBS	Chr6	17530005	T-C	Hetero	INTERGENIC
SBS	Chr6	30235575	C-T	Hetero	INTERGENIC
SBS	Chr7	12060766	G-A	Hetero	INTERGENIC
SBS	Chr7	14677777	C-T	Hetero	INTERGENIC
SBS	Chr7	21949458	C-T	Homo	INTERGENIC
SBS	Chr7	24460914	G-A	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr10	17854098	G-A	Hetero	INTRON
SBS	Chr10	19622071	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g144900
SBS	Chr11	7625383	C-T	Hetero	INTERGENIC
SBS	Chr11	11632265	T-C	Homo	INTERGENIC
SBS	Chr11	12330703	C-T	Homo	INTERGENIC
SBS	Chr11	12448523	G-C	Homo	INTERGENIC
SBS	Chr11	28025009	G-A	Homo	INTERGENIC
SBS	Chr12	12897474	C-G	Hetero	INTERGENIC
SBS	Chr12	26007075	A-G	Hetero	INTERGENIC
SBS	Chr12	26863797	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	203352	203358	6	OsKitaake05g002500
Deletion	Chr4	487315	487317	2
Deletion	Chr11	736001	749000	12999	2
Deletion	Chr8	1643784	1643796	12
Deletion	Chr12	4039561	4039571	10
Deletion	Chr12	4552262	4552273	11
Deletion	Chr5	6702001	6720000	17999	2
Deletion	Chr11	7559420	7559424	4	OsKitaake11g085000
Deletion	Chr1	8479001	8488000	8999	OsKitaake01g105900
Deletion	Chr9	8801392	8801396	4
Deletion	Chr1	11531001	11604000	72999	6
Deletion	Chr6	13231001	13249000	17999	OsKitaake06g139700
Deletion	Chr10	18583990	18583992	2
Deletion	Chr3	21388268	21388276	8
Deletion	Chr11	22997957	22997980	23
Deletion	Chr11	27114733	27114736	3
Deletion	Chr5	29074558	29074562	4
Deletion	Chr11	29600268	29600270	2
Deletion	Chr3	30895745	30895757	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6700586	6736535
Inversion	Chr5	6719196	6737523
Inversion	Chr12	21789937	22744144	OsKitaake12g179500
Inversion	Chr12	22688292	22744012	OsKitaake12g179500
Inversion	Chr1	31102274	31273085
Inversion	Chr1	31102283	31273093

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes