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Mutant Information

Mutant Name	FN788-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN788-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10252945 C-T Hetero INTERGENIC
SBS Chr1 14448150 T-A Hetero INTERGENIC
SBS Chr1 19508465 C-T Hetero INTERGENIC
SBS Chr1 26528170 C-T Hetero INTERGENIC
SBS Chr1 27314837 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 31790839 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g319500
SBS Chr1 33522221 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g343100
SBS Chr1 35691530 C-A Hetero INTERGENIC
SBS Chr1 35945869 G-A Hetero INTERGENIC
SBS Chr2 4033708 T-A Homo INTERGENIC
SBS Chr2 4441461 A-G Hetero INTERGENIC
SBS Chr2 6151431 G-A Homo INTERGENIC
SBS Chr2 9422220 A-T Homo INTERGENIC
SBS Chr2 9455126 G-A Homo INTERGENIC
SBS Chr2 15817161 G-A Hetero INTRON
SBS Chr2 17289163 A-T Hetero INTERGENIC
SBS Chr2 19582436 A-G Hetero INTRON
SBS Chr2 31770306 G-A Hetero INTERGENIC
SBS Chr3 11297052 T-C Homo INTERGENIC
SBS Chr3 21781794 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g239200
SBS Chr4 4092811 C-T Homo INTERGENIC
SBS Chr4 4930545 T-C Homo INTERGENIC
SBS Chr4 31091372 A-T Hetero INTERGENIC
SBS Chr5 8507931 C-A Hetero INTERGENIC
SBS Chr5 10455648 C-T Hetero INTERGENIC
SBS Chr5 22819217 A-C Homo INTERGENIC
SBS Chr5 29350747 T-A Hetero INTERGENIC
SBS Chr5 29681232 G-T Hetero INTERGENIC
SBS Chr6 9501105 A-G Hetero INTERGENIC
SBS Chr6 25035546 C-T Hetero INTERGENIC
SBS Chr7 22500061 G-A Homo INTERGENIC
SBS Chr7 24614387 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g219100
SBS Chr7 27460857 G-A Hetero INTRON
SBS Chr8 1008055 G-A Hetero INTERGENIC
SBS Chr10 588080 T-C Homo INTERGENIC
SBS Chr11 10269834 A-G Homo INTERGENIC
SBS Chr11 27863346 G-A Hetero INTERGENIC
SBS Chr11 27863347 C-A Hetero INTERGENIC
SBS Chr12 4426744 A-G Homo INTERGENIC
SBS Chr12 17780450 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr8 627005 627014 9
Deletion Chr1 3545688 3545704 16
Deletion Chr8 4737476 4737479 3
Deletion Chr5 5588737 5588738 1
Deletion Chr8 9881241 9881244 3
Deletion Chr3 10607602 10607608 6
Deletion Chr6 12432724 12432725 1
Deletion Chr1 12581001 12744000 162999 4
Deletion Chr12 12692863 12692864 1
Deletion Chr7 16460635 16460641 6
Deletion Chr11 21645857 21645871 14
Deletion Chr9 22091001 22172000 80999 15
Deletion Chr5 22807475 22807480 5
Deletion Chr12 26372847 26372848 1
Deletion Chr8 28286049 28286050 1 OsKitaake08g239000
Deletion Chr11 29679001 29739000 59999 4

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23146854 23146857 2
Insertion Chr3 15986072 15986075 2
Insertion Chr7 24561726 24561729 2
Insertion Chr8 1216979 1216982 2
Insertion Chr8 26521257 26521260 2
Insertion Chr10 2232757 2232760 2
Insertion Chr5 16011110 16011112 1
Insertion Chr8 2510172 2510174 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11450750 11965252 OsKitaake01g146800
Inversion Chr1 11450787 11965255 OsKitaake01g146800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10252945	C-T	Hetero	INTERGENIC
SBS	Chr1	14448150	T-A	Hetero	INTERGENIC
SBS	Chr1	19508465	C-T	Hetero	INTERGENIC
SBS	Chr1	26528170	C-T	Hetero	INTERGENIC
SBS	Chr1	27314837	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	31790839	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g319500
SBS	Chr1	33522221	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g343100
SBS	Chr1	35691530	C-A	Hetero	INTERGENIC
SBS	Chr1	35945869	G-A	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Homo	INTERGENIC
SBS	Chr2	4441461	A-G	Hetero	INTERGENIC
SBS	Chr2	6151431	G-A	Homo	INTERGENIC
SBS	Chr2	9422220	A-T	Homo	INTERGENIC
SBS	Chr2	9455126	G-A	Homo	INTERGENIC
SBS	Chr2	15817161	G-A	Hetero	INTRON
SBS	Chr2	17289163	A-T	Hetero	INTERGENIC
SBS	Chr2	19582436	A-G	Hetero	INTRON
SBS	Chr2	31770306	G-A	Hetero	INTERGENIC
SBS	Chr3	11297052	T-C	Homo	INTERGENIC
SBS	Chr3	21781794	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g239200
SBS	Chr4	4092811	C-T	Homo	INTERGENIC
SBS	Chr4	4930545	T-C	Homo	INTERGENIC
SBS	Chr4	31091372	A-T	Hetero	INTERGENIC
SBS	Chr5	8507931	C-A	Hetero	INTERGENIC
SBS	Chr5	10455648	C-T	Hetero	INTERGENIC
SBS	Chr5	22819217	A-C	Homo	INTERGENIC
SBS	Chr5	29350747	T-A	Hetero	INTERGENIC
SBS	Chr5	29681232	G-T	Hetero	INTERGENIC
SBS	Chr6	9501105	A-G	Hetero	INTERGENIC
SBS	Chr6	25035546	C-T	Hetero	INTERGENIC
SBS	Chr7	22500061	G-A	Homo	INTERGENIC
SBS	Chr7	24614387	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g219100
SBS	Chr7	27460857	G-A	Hetero	INTRON
SBS	Chr8	1008055	G-A	Hetero	INTERGENIC
SBS	Chr10	588080	T-C	Homo	INTERGENIC
SBS	Chr11	10269834	A-G	Homo	INTERGENIC
SBS	Chr11	27863346	G-A	Hetero	INTERGENIC
SBS	Chr11	27863347	C-A	Hetero	INTERGENIC
SBS	Chr12	4426744	A-G	Homo	INTERGENIC
SBS	Chr12	17780450	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr8	627005	627014	9
Deletion	Chr1	3545688	3545704	16
Deletion	Chr8	4737476	4737479	3
Deletion	Chr5	5588737	5588738	1
Deletion	Chr8	9881241	9881244	3
Deletion	Chr3	10607602	10607608	6
Deletion	Chr6	12432724	12432725	1
Deletion	Chr1	12581001	12744000	162999	4
Deletion	Chr12	12692863	12692864	1
Deletion	Chr7	16460635	16460641	6
Deletion	Chr11	21645857	21645871	14
Deletion	Chr9	22091001	22172000	80999	15
Deletion	Chr5	22807475	22807480	5
Deletion	Chr12	26372847	26372848	1
Deletion	Chr8	28286049	28286050	1	OsKitaake08g239000
Deletion	Chr11	29679001	29739000	59999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11450750	11965252	OsKitaake01g146800
Inversion	Chr1	11450787	11965255	OsKitaake01g146800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes