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| Mutant Information |
|---|
| Mutant Name | FN790-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN790-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1004791 | G-T | Homo | INTRON | |
| SBS | Chr1 | 10625649 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 12664900 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 42336839 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43436197 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 23930121 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 8567229 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 8569333 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31055698 | G-A | Homo | INTRON | |
| SBS | Chr4 | 1432572 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7610215 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 6070353 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 6227618 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18129862 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6258009 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 2397601 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 12552222 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 21002408 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25010418 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13769118 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 10626376 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16508955 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17734794 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28130307 | T-C | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 7105 | 7456 | 351 | |
| Deletion | Chr5 | 7381019 | 7381025 | 6 | OsKitaake05g074000 |
| Deletion | Chr12 | 9517221 | 9517222 | 1 | |
| Deletion | Chr3 | 13734001 | 13745000 | 10999 | OsKitaake03g181900 |
| Deletion | Chr5 | 15925390 | 15925391 | 1 | |
| Deletion | Chr4 | 18389411 | 18389414 | 3 | |
| Deletion | Chr7 | 19290156 | 19290158 | 2 | |
| Deletion | Chr9 | 20368249 | 20368256 | 7 | |
| Deletion | Chr7 | 26659821 | 26659822 | 1 | |
| Deletion | Chr5 | 29401543 | 29401545 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 27729824 | 27729827 | 2 | |
| Insertion | Chr7 | 11984659 | 11984661 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 8594099 | 8846704 | OsKitaake03g118000 |
| Inversion | Chr3 | 8594116 | 8846719 | OsKitaake03g118000 |
| Inversion | Chr5 | 19477033 | 19591406 | |
| Inversion | Chr5 | 19477052 | 19591433 |