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Mutant Information

Mutant Name	FN794-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN794-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr2 5794231 T-C Hetero INTERGENIC
SBS Chr2 6954581 C-T Hetero INTERGENIC
SBS Chr2 29790482 C-A Homo INTERGENIC
SBS Chr2 32135133 C-T Hetero INTERGENIC
SBS Chr2 36365788 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g385300
SBS Chr3 7406462 A-T Hetero INTRON
SBS Chr3 7515587 A-G Hetero UTR_3_PRIME
SBS Chr3 7575531 A-G Hetero INTERGENIC
SBS Chr3 16546623 T-C Homo INTERGENIC
SBS Chr3 30934043 T-A Homo INTRON
SBS Chr4 2463115 A-T Hetero INTERGENIC
SBS Chr4 16506925 C-G Hetero INTRON
SBS Chr4 18259417 G-A Hetero INTERGENIC
SBS Chr4 23305573 C-T Homo INTERGENIC
SBS Chr4 31152913 C-G Hetero INTERGENIC
SBS Chr5 15460083 C-T Hetero INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr6 21172605 G-T Homo INTERGENIC
SBS Chr6 27609728 T-C Hetero INTERGENIC
SBS Chr6 27609729 C-T Hetero INTERGENIC
SBS Chr6 28058000 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g254600
SBS Chr7 4166740 G-A Hetero INTERGENIC
SBS Chr7 11877297 G-A Hetero INTERGENIC
SBS Chr9 15394961 A-G Homo INTERGENIC
SBS Chr10 19824595 T-A Hetero INTERGENIC
SBS Chr11 3986635 C-T Hetero INTERGENIC
SBS Chr11 13884075 G-A Homo INTERGENIC
SBS Chr11 20501545 C-T Homo INTERGENIC
SBS Chr11 26821785 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g218200
SBS Chr12 1981510 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1746349 1746359 10
Deletion Chr11 4168001 4188000 19999 3
Deletion Chr2 12517540 12517542 2
Deletion Chr6 12571136 12571139 3
Deletion Chr2 13817486 13817651 165
Deletion Chr8 14414976 14414989 13
Deletion Chr9 14945912 14945914 2 OsKitaake09g103300
Deletion Chr3 17003026 17003052 26
Deletion Chr5 17535476 17535482 6
Deletion Chr2 17675526 17675528 2
Deletion Chr7 19647270 19647271 1
Deletion Chr1 23290802 23290804 2
Deletion Chr11 23775558 23775561 3 OsKitaake11g190200
Deletion Chr7 26711614 26711616 2
Deletion Chr8 28419129 28419135 6
Deletion Chr4 35844862 35844863 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 14863209 14863211 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 7202589 7626891
Inversion Chr8 19647460 20456839 2
Inversion Chr8 19647469 20456858 2
Inversion Chr5 27514260 27703827 OsKitaake05g250601
Inversion Chr5 27514262 27703831 OsKitaake05g250601

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 7202851 Chr6 21174465

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr2	5794231	T-C	Hetero	INTERGENIC
SBS	Chr2	6954581	C-T	Hetero	INTERGENIC
SBS	Chr2	29790482	C-A	Homo	INTERGENIC
SBS	Chr2	32135133	C-T	Hetero	INTERGENIC
SBS	Chr2	36365788	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g385300
SBS	Chr3	7406462	A-T	Hetero	INTRON
SBS	Chr3	7515587	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	7575531	A-G	Hetero	INTERGENIC
SBS	Chr3	16546623	T-C	Homo	INTERGENIC
SBS	Chr3	30934043	T-A	Homo	INTRON
SBS	Chr4	2463115	A-T	Hetero	INTERGENIC
SBS	Chr4	16506925	C-G	Hetero	INTRON
SBS	Chr4	18259417	G-A	Hetero	INTERGENIC
SBS	Chr4	23305573	C-T	Homo	INTERGENIC
SBS	Chr4	31152913	C-G	Hetero	INTERGENIC
SBS	Chr5	15460083	C-T	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr6	21172605	G-T	Homo	INTERGENIC
SBS	Chr6	27609728	T-C	Hetero	INTERGENIC
SBS	Chr6	27609729	C-T	Hetero	INTERGENIC
SBS	Chr6	28058000	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g254600
SBS	Chr7	4166740	G-A	Hetero	INTERGENIC
SBS	Chr7	11877297	G-A	Hetero	INTERGENIC
SBS	Chr9	15394961	A-G	Homo	INTERGENIC
SBS	Chr10	19824595	T-A	Hetero	INTERGENIC
SBS	Chr11	3986635	C-T	Hetero	INTERGENIC
SBS	Chr11	13884075	G-A	Homo	INTERGENIC
SBS	Chr11	20501545	C-T	Homo	INTERGENIC
SBS	Chr11	26821785	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g218200
SBS	Chr12	1981510	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1746349	1746359	10
Deletion	Chr11	4168001	4188000	19999	3
Deletion	Chr2	12517540	12517542	2
Deletion	Chr6	12571136	12571139	3
Deletion	Chr2	13817486	13817651	165
Deletion	Chr8	14414976	14414989	13
Deletion	Chr9	14945912	14945914	2	OsKitaake09g103300
Deletion	Chr3	17003026	17003052	26
Deletion	Chr5	17535476	17535482	6
Deletion	Chr2	17675526	17675528	2
Deletion	Chr7	19647270	19647271	1
Deletion	Chr1	23290802	23290804	2
Deletion	Chr11	23775558	23775561	3	OsKitaake11g190200
Deletion	Chr7	26711614	26711616	2
Deletion	Chr8	28419129	28419135	6
Deletion	Chr4	35844862	35844863	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7202589	7626891
Inversion	Chr8	19647460	20456839	2
Inversion	Chr8	19647469	20456858	2
Inversion	Chr5	27514260	27703827	OsKitaake05g250601
Inversion	Chr5	27514262	27703831	OsKitaake05g250601

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes