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Mutant Information

Mutant Name	FN795-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN795-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30615287 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g303200
SBS Chr2 18071775 A-G Hetero INTERGENIC
SBS Chr3 14208330 T-C Hetero INTERGENIC
SBS Chr3 16135131 C-T Hetero INTERGENIC
SBS Chr3 19221552 C-A Hetero INTERGENIC
SBS Chr3 33726318 T-C Hetero INTRON
SBS Chr4 11341444 C-T Hetero INTERGENIC
SBS Chr4 32312862 A-G Hetero INTERGENIC
SBS Chr4 34457590 A-G Hetero INTERGENIC
SBS Chr4 36629436 C-A Hetero INTERGENIC
SBS Chr5 13494366 A-T Hetero INTERGENIC
SBS Chr5 20361510 A-C Hetero INTRON
SBS Chr5 23242910 C-T Hetero INTERGENIC
SBS Chr5 23262851 C-T Hetero INTERGENIC
SBS Chr6 9928622 G-T Homo INTERGENIC
SBS Chr6 9928623 A-T Homo INTERGENIC
SBS Chr6 23429350 A-T Hetero INTERGENIC
SBS Chr6 24342780 T-A Homo INTERGENIC
SBS Chr6 27004886 G-A Hetero INTERGENIC
SBS Chr7 24316959 T-A Homo INTRON
SBS Chr8 5518197 G-A Hetero INTERGENIC
SBS Chr8 6571365 G-T Homo INTERGENIC
SBS Chr8 7236003 C-G Homo INTERGENIC
SBS Chr8 8077389 T-A Hetero INTRON
SBS Chr8 27143930 A-T Hetero INTRON
SBS Chr10 400232 T-A Homo INTERGENIC
SBS Chr10 5125924 A-G Hetero INTERGENIC
SBS Chr10 15112207 A-G Hetero INTERGENIC
SBS Chr10 21242699 G-A Hetero INTERGENIC
SBS Chr12 620995 A-C Hetero INTRON
SBS Chr12 1321030 G-A Hetero INTRON
SBS Chr12 7224348 A-T Hetero INTERGENIC
SBS Chr12 15939029 T-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 820231 820235 4
Deletion Chr3 2137114 2137116 2
Deletion Chr3 3585997 3585999 2 OsKitaake03g050600
Deletion Chr7 3814676 3814681 5
Deletion Chr3 6870445 6870453 8
Deletion Chr12 8522802 8522803 1
Deletion Chr10 13790001 13805000 14999 OsKitaake10g084300
Deletion Chr11 18194675 18194676 1
Deletion Chr3 18945001 18973000 27999 OsKitaake03g227400
Deletion Chr11 20863304 20863308 4 OsKitaake11g164800
Deletion Chr10 22239159 22239160 1
Deletion Chr5 25104709 25104713 4
Deletion Chr5 26229799 26229802 3 OsKitaake05g231800
Deletion Chr1 33660914 33660915 1 OsKitaake01g345000
Deletion Chr1 35971276 35971285 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29292738 29292741 2
Insertion Chr3 9408961 9408964 2
Insertion Chr7 11066041 11066044 2
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400
Insertion Chr4 15771735 15771737 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1813505 Chr4 7831004
Translocation Chr11 1813506 Chr7 8503051
Translocation Chr11 1813512 Chr7 8503614
Translocation Chr7 7561699 Chr3 27650414
Translocation Chr10 13791350 Chr3 28607098 OsKitaake03g296600
Translocation Chr10 13805417 Chr3 28607990 OsKitaake03g296600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30615287	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g303200
SBS	Chr2	18071775	A-G	Hetero	INTERGENIC
SBS	Chr3	14208330	T-C	Hetero	INTERGENIC
SBS	Chr3	16135131	C-T	Hetero	INTERGENIC
SBS	Chr3	19221552	C-A	Hetero	INTERGENIC
SBS	Chr3	33726318	T-C	Hetero	INTRON
SBS	Chr4	11341444	C-T	Hetero	INTERGENIC
SBS	Chr4	32312862	A-G	Hetero	INTERGENIC
SBS	Chr4	34457590	A-G	Hetero	INTERGENIC
SBS	Chr4	36629436	C-A	Hetero	INTERGENIC
SBS	Chr5	13494366	A-T	Hetero	INTERGENIC
SBS	Chr5	20361510	A-C	Hetero	INTRON
SBS	Chr5	23242910	C-T	Hetero	INTERGENIC
SBS	Chr5	23262851	C-T	Hetero	INTERGENIC
SBS	Chr6	9928622	G-T	Homo	INTERGENIC
SBS	Chr6	9928623	A-T	Homo	INTERGENIC
SBS	Chr6	23429350	A-T	Hetero	INTERGENIC
SBS	Chr6	24342780	T-A	Homo	INTERGENIC
SBS	Chr6	27004886	G-A	Hetero	INTERGENIC
SBS	Chr7	24316959	T-A	Homo	INTRON
SBS	Chr8	5518197	G-A	Hetero	INTERGENIC
SBS	Chr8	6571365	G-T	Homo	INTERGENIC
SBS	Chr8	7236003	C-G	Homo	INTERGENIC
SBS	Chr8	8077389	T-A	Hetero	INTRON
SBS	Chr8	27143930	A-T	Hetero	INTRON
SBS	Chr10	400232	T-A	Homo	INTERGENIC
SBS	Chr10	5125924	A-G	Hetero	INTERGENIC
SBS	Chr10	15112207	A-G	Hetero	INTERGENIC
SBS	Chr10	21242699	G-A	Hetero	INTERGENIC
SBS	Chr12	620995	A-C	Hetero	INTRON
SBS	Chr12	1321030	G-A	Hetero	INTRON
SBS	Chr12	7224348	A-T	Hetero	INTERGENIC
SBS	Chr12	15939029	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	820231	820235	4
Deletion	Chr3	2137114	2137116	2
Deletion	Chr3	3585997	3585999	2	OsKitaake03g050600
Deletion	Chr7	3814676	3814681	5
Deletion	Chr3	6870445	6870453	8
Deletion	Chr12	8522802	8522803	1
Deletion	Chr10	13790001	13805000	14999	OsKitaake10g084300
Deletion	Chr11	18194675	18194676	1
Deletion	Chr3	18945001	18973000	27999	OsKitaake03g227400
Deletion	Chr11	20863304	20863308	4	OsKitaake11g164800
Deletion	Chr10	22239159	22239160	1
Deletion	Chr5	25104709	25104713	4
Deletion	Chr5	26229799	26229802	3	OsKitaake05g231800
Deletion	Chr1	33660914	33660915	1	OsKitaake01g345000
Deletion	Chr1	35971276	35971285	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1813505	Chr4	7831004
Translocation	Chr11	1813506	Chr7	8503051
Translocation	Chr11	1813512	Chr7	8503614
Translocation	Chr7	7561699	Chr3	27650414
Translocation	Chr10	13791350	Chr3	28607098	OsKitaake03g296600
Translocation	Chr10	13805417	Chr3	28607990	OsKitaake03g296600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes