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Mutant Information

Mutant Name	FN796-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN796-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5168191 A-T Hetero INTERGENIC
SBS Chr1 27483197 C-T Hetero INTERGENIC
SBS Chr1 29800368 T-A Homo INTERGENIC
SBS Chr2 2922438 T-C Homo UTR_3_PRIME
SBS Chr2 22855093 G-A Homo INTRON
SBS Chr2 31126006 G-T Homo INTRON
SBS Chr3 22968942 C-T Hetero INTERGENIC
SBS Chr3 22968944 C-T Hetero INTERGENIC
SBS Chr3 27889432 G-A Homo INTERGENIC
SBS Chr3 30836653 T-C Hetero INTERGENIC
SBS Chr4 17155850 A-G Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 27512877 C-A Hetero UTR_3_PRIME
SBS Chr4 29329233 C-A Hetero INTERGENIC
SBS Chr4 31389381 T-A Hetero INTRON
SBS Chr5 17964575 C-T Homo INTERGENIC
SBS Chr5 30138256 C-A Hetero INTERGENIC
SBS Chr6 13778169 C-T Homo INTERGENIC
SBS Chr7 2110423 T-C Hetero INTERGENIC
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 10404372 G-A Hetero INTERGENIC
SBS Chr7 25407219 C-G Hetero INTERGENIC
SBS Chr7 25407222 C-T Hetero INTERGENIC
SBS Chr7 28453151 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 3668128 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g041000
SBS Chr8 21651835 C-T Hetero INTERGENIC
SBS Chr9 916240 T-G Hetero INTERGENIC
SBS Chr9 6888319 C-T Hetero INTERGENIC
SBS Chr9 7059754 C-G Hetero INTERGENIC
SBS Chr9 9900420 T-C Homo INTERGENIC
SBS Chr9 19583606 T-A Hetero INTERGENIC
SBS Chr10 178311 T-A Hetero INTERGENIC
SBS Chr10 2830148 T-C Hetero INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr11 8003219 C-T Hetero INTERGENIC
SBS Chr11 12857605 G-A Hetero INTERGENIC
SBS Chr12 13483044 C-T Hetero INTRON
SBS Chr12 21705444 G-A Homo UTR_5_PRIME
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2837659 2837667 8
Deletion Chr8 6002673 6002675 2
Deletion Chr3 7082564 7082566 2
Deletion Chr3 7139537 7139555 18
Deletion Chr8 9385619 9385628 9
Deletion Chr5 14656623 14656636 13
Deletion Chr2 16340393 16340398 5
Deletion Chr2 18161001 18275000 113999 8
Deletion Chr5 18492870 18492871 1
Deletion Chr2 19796940 19796948 8
Deletion Chr9 19991864 19991866 2
Deletion Chr5 22126001 22180000 53999 4
Deletion Chr9 22346867 22346868 1 OsKitaake09g202500
Deletion Chr4 23022839 23022852 13
Deletion Chr6 26387001 26435000 47999 8
Deletion Chr8 29298701 29299407 706
Deletion Chr2 29648329 29648331 2
Deletion Chr1 31060661 31060662 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr8 17651259 17651262 2
Insertion Chr12 21311749 21311752 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 18160760 18532398
Inversion Chr2 18272339 18532407
Inversion Chr1 20777830 20883076
Inversion Chr1 20777852 20883090

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5168191	A-T	Hetero	INTERGENIC
SBS	Chr1	27483197	C-T	Hetero	INTERGENIC
SBS	Chr1	29800368	T-A	Homo	INTERGENIC
SBS	Chr2	2922438	T-C	Homo	UTR_3_PRIME
SBS	Chr2	22855093	G-A	Homo	INTRON
SBS	Chr2	31126006	G-T	Homo	INTRON
SBS	Chr3	22968942	C-T	Hetero	INTERGENIC
SBS	Chr3	22968944	C-T	Hetero	INTERGENIC
SBS	Chr3	27889432	G-A	Homo	INTERGENIC
SBS	Chr3	30836653	T-C	Hetero	INTERGENIC
SBS	Chr4	17155850	A-G	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	27512877	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	29329233	C-A	Hetero	INTERGENIC
SBS	Chr4	31389381	T-A	Hetero	INTRON
SBS	Chr5	17964575	C-T	Homo	INTERGENIC
SBS	Chr5	30138256	C-A	Hetero	INTERGENIC
SBS	Chr6	13778169	C-T	Homo	INTERGENIC
SBS	Chr7	2110423	T-C	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	10404372	G-A	Hetero	INTERGENIC
SBS	Chr7	25407219	C-G	Hetero	INTERGENIC
SBS	Chr7	25407222	C-T	Hetero	INTERGENIC
SBS	Chr7	28453151	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	3668128	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g041000
SBS	Chr8	21651835	C-T	Hetero	INTERGENIC
SBS	Chr9	916240	T-G	Hetero	INTERGENIC
SBS	Chr9	6888319	C-T	Hetero	INTERGENIC
SBS	Chr9	7059754	C-G	Hetero	INTERGENIC
SBS	Chr9	9900420	T-C	Homo	INTERGENIC
SBS	Chr9	19583606	T-A	Hetero	INTERGENIC
SBS	Chr10	178311	T-A	Hetero	INTERGENIC
SBS	Chr10	2830148	T-C	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr11	8003219	C-T	Hetero	INTERGENIC
SBS	Chr11	12857605	G-A	Hetero	INTERGENIC
SBS	Chr12	13483044	C-T	Hetero	INTRON
SBS	Chr12	21705444	G-A	Homo	UTR_5_PRIME
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2837659	2837667	8
Deletion	Chr8	6002673	6002675	2
Deletion	Chr3	7082564	7082566	2
Deletion	Chr3	7139537	7139555	18
Deletion	Chr8	9385619	9385628	9
Deletion	Chr5	14656623	14656636	13
Deletion	Chr2	16340393	16340398	5
Deletion	Chr2	18161001	18275000	113999	8
Deletion	Chr5	18492870	18492871	1
Deletion	Chr2	19796940	19796948	8
Deletion	Chr9	19991864	19991866	2
Deletion	Chr5	22126001	22180000	53999	4
Deletion	Chr9	22346867	22346868	1	OsKitaake09g202500
Deletion	Chr4	23022839	23022852	13
Deletion	Chr6	26387001	26435000	47999	8
Deletion	Chr8	29298701	29299407	706
Deletion	Chr2	29648329	29648331	2
Deletion	Chr1	31060661	31060662	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	18160760	18532398
Inversion	Chr2	18272339	18532407
Inversion	Chr1	20777830	20883076
Inversion	Chr1	20777852	20883090

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes