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Mutant Information

Mutant Name	FN797-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN797-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 29992678 A-G Homo UTR_3_PRIME
SBS Chr2 29992702 C-T Homo UTR_3_PRIME
SBS Chr2 30190575 A-C Homo NON_SYNONYMOUS_CODING OsKitaake02g307200
SBS Chr2 32375799 T-C Homo INTERGENIC
SBS Chr3 6845057 T-A Hetero INTERGENIC
SBS Chr4 2255226 C-G Homo INTERGENIC
SBS Chr4 4729237 A-G Hetero INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr5 6019614 T-C Hetero INTERGENIC
SBS Chr5 14838930 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g113100
SBS Chr5 16433538 C-T Hetero INTERGENIC
SBS Chr6 23855002 C-T Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 25487922 A-G Homo SYNONYMOUS_CODING
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr7 27964390 T-C Homo INTRON
SBS Chr8 3207760 G-C Hetero INTERGENIC
SBS Chr8 23229461 A-G Hetero INTRON
SBS Chr8 23642960 G-T Hetero INTERGENIC
SBS Chr10 4741470 G-C Hetero INTERGENIC
SBS Chr11 6868241 T-C Homo INTERGENIC
SBS Chr11 17213029 T-G Homo INTERGENIC
SBS Chr12 15617651 T-G Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5791480 5791483 3 OsKitaake01g073500
Deletion Chr11 6864850 6864859 9
Deletion Chr12 8615082 8615096 14
Deletion Chr3 12473967 12473972 5
Deletion Chr10 18880176 18880187 11
Deletion Chr12 21378718 21378722 4
Deletion Chr5 30226057 30226409 352
Deletion Chr5 30227817 30228169 352
Deletion Chr1 32200784 32200788 4
Deletion Chr2 32240632 32240634 2
Deletion Chr2 33878564 33878565 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 12070962 12070965 2
Insertion Chr5 821856 821859 2
Insertion Chr5 3724156 3724159 2
Insertion Chr9 620883 620886 2
Insertion Chr12 519565 519568 2
Insertion Chr12 753268 753271 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1632849 1847020 OsKitaake03g026300
Inversion Chr3 1633875 1847025 OsKitaake03g026300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1632851 Chr1 30099207
Translocation Chr3 1633869 Chr1 30099206

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	29992678	A-G	Homo	UTR_3_PRIME
SBS	Chr2	29992702	C-T	Homo	UTR_3_PRIME
SBS	Chr2	30190575	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g307200
SBS	Chr2	32375799	T-C	Homo	INTERGENIC
SBS	Chr3	6845057	T-A	Hetero	INTERGENIC
SBS	Chr4	2255226	C-G	Homo	INTERGENIC
SBS	Chr4	4729237	A-G	Hetero	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr5	6019614	T-C	Hetero	INTERGENIC
SBS	Chr5	14838930	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g113100
SBS	Chr5	16433538	C-T	Hetero	INTERGENIC
SBS	Chr6	23855002	C-T	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	25487922	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr7	27964390	T-C	Homo	INTRON
SBS	Chr8	3207760	G-C	Hetero	INTERGENIC
SBS	Chr8	23229461	A-G	Hetero	INTRON
SBS	Chr8	23642960	G-T	Hetero	INTERGENIC
SBS	Chr10	4741470	G-C	Hetero	INTERGENIC
SBS	Chr11	6868241	T-C	Homo	INTERGENIC
SBS	Chr11	17213029	T-G	Homo	INTERGENIC
SBS	Chr12	15617651	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5791480	5791483	3	OsKitaake01g073500
Deletion	Chr11	6864850	6864859	9
Deletion	Chr12	8615082	8615096	14
Deletion	Chr3	12473967	12473972	5
Deletion	Chr10	18880176	18880187	11
Deletion	Chr12	21378718	21378722	4
Deletion	Chr5	30226057	30226409	352
Deletion	Chr5	30227817	30228169	352
Deletion	Chr1	32200784	32200788	4
Deletion	Chr2	32240632	32240634	2
Deletion	Chr2	33878564	33878565	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1632849	1847020	OsKitaake03g026300
Inversion	Chr3	1633875	1847025	OsKitaake03g026300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes