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| Mutant Information |
|---|
| Mutant Name | FN798-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN798-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7244819 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 8250411 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27479440 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 32289396 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33321826 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 10965033 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29387265 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4492359 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30549087 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 33823666 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1745516 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14962830 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25836406 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 26969093 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g241600 |
| SBS | Chr5 | 29283489 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 15143842 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18409870 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 16732672 | C-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 18924593 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 19037345 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19235222 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 10067962 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 18209875 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18273680 | C-T | Homo | INTRON | |
| SBS | Chr9 | 20244610 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17851178 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 23441012 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25658417 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14313234 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 21378856 | C-G | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 745001 | 762000 | 16999 | OsKitaake02g010500 |
| Deletion | Chr11 | 5611432 | 5611437 | 5 | |
| Deletion | Chr6 | 6161349 | 6161357 | 8 | |
| Deletion | Chr5 | 7094001 | 7211000 | 116999 | 10 |
| Deletion | Chr8 | 8125092 | 8125218 | 126 | OsKitaake08g074300 |
| Deletion | Chr12 | 10699499 | 10699500 | 1 | |
| Deletion | Chr4 | 11035158 | 11035175 | 17 | |
| Deletion | Chr1 | 13600938 | 13600940 | 2 | |
| Deletion | Chr12 | 17958379 | 17958391 | 12 | |
| Deletion | Chr8 | 20067248 | 20067266 | 18 | |
| Deletion | Chr11 | 20138634 | 20138731 | 97 | |
| Deletion | Chr10 | 21684761 | 21684767 | 6 | |
| Deletion | Chr4 | 24391839 | 24391935 | 96 | OsKitaake04g158400 |
| Deletion | Chr2 | 30552637 | 30552708 | 71 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5590 | 5593 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 3834695 | 3957068 | |
| Inversion | Chr8 | 3834720 | 3957069 |