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Mutant Information

Mutant Name	FN799-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN799-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15352309 C-G Hetero INTERGENIC
SBS Chr1 24764250 C-T Hetero INTERGENIC
SBS Chr1 24764256 A-T Hetero INTERGENIC
SBS Chr1 27851686 C-T Hetero INTERGENIC
SBS Chr2 25305241 T-G Homo INTERGENIC
SBS Chr2 35977394 G-A Hetero UTR_3_PRIME
SBS Chr3 18127418 C-T Hetero INTERGENIC
SBS Chr3 22705627 C-T Hetero INTERGENIC
SBS Chr4 6235263 A-T Hetero INTRON
SBS Chr4 25986941 T-A Hetero INTERGENIC
SBS Chr4 25986942 G-A Hetero INTERGENIC
SBS Chr6 18789833 C-A Hetero INTRON
SBS Chr6 22456691 T-A Homo INTERGENIC
SBS Chr7 10291277 T-C Homo INTERGENIC
SBS Chr7 11536033 C-A Homo INTERGENIC
SBS Chr7 14170881 A-T Hetero INTRON
SBS Chr9 2249701 G-C Hetero INTERGENIC
SBS Chr9 21757137 T-A Hetero INTERGENIC
SBS Chr11 2881438 A-G Homo INTRON
SBS Chr11 15365727 C-T Hetero INTERGENIC
SBS Chr11 25661590 A-T Homo INTERGENIC
SBS Chr11 29565064 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g243500
SBS Chr12 7853275 C-T Hetero INTERGENIC
SBS Chr12 25027612 C-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 5441273 5441275 2
Deletion Chr3 9131683 9131685 2
Deletion Chr8 10709283 10709285 2
Deletion Chr10 14644999 14645047 48
Deletion Chr11 15877001 15996000 118999 10
Deletion Chr12 18920585 18920587 2
Deletion Chr2 22224307 22224322 15
Deletion Chr2 25119001 25145000 25999 2
Deletion Chr2 26167003 26167005 2
Deletion Chr1 33897240 33897243 3
Deletion Chr3 36556547 36556549 2
Deletion Chr2 36702612 36702613 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9650240 9650243 2
Insertion Chr3 21495425 21495428 2
Insertion Chr5 15830780 15830783 2
Insertion Chr7 29229806 29229808 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15352309	C-G	Hetero	INTERGENIC
SBS	Chr1	24764250	C-T	Hetero	INTERGENIC
SBS	Chr1	24764256	A-T	Hetero	INTERGENIC
SBS	Chr1	27851686	C-T	Hetero	INTERGENIC
SBS	Chr2	25305241	T-G	Homo	INTERGENIC
SBS	Chr2	35977394	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	18127418	C-T	Hetero	INTERGENIC
SBS	Chr3	22705627	C-T	Hetero	INTERGENIC
SBS	Chr4	6235263	A-T	Hetero	INTRON
SBS	Chr4	25986941	T-A	Hetero	INTERGENIC
SBS	Chr4	25986942	G-A	Hetero	INTERGENIC
SBS	Chr6	18789833	C-A	Hetero	INTRON
SBS	Chr6	22456691	T-A	Homo	INTERGENIC
SBS	Chr7	10291277	T-C	Homo	INTERGENIC
SBS	Chr7	11536033	C-A	Homo	INTERGENIC
SBS	Chr7	14170881	A-T	Hetero	INTRON
SBS	Chr9	2249701	G-C	Hetero	INTERGENIC
SBS	Chr9	21757137	T-A	Hetero	INTERGENIC
SBS	Chr11	2881438	A-G	Homo	INTRON
SBS	Chr11	15365727	C-T	Hetero	INTERGENIC
SBS	Chr11	25661590	A-T	Homo	INTERGENIC
SBS	Chr11	29565064	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g243500
SBS	Chr12	7853275	C-T	Hetero	INTERGENIC
SBS	Chr12	25027612	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	5441273	5441275	2
Deletion	Chr3	9131683	9131685	2
Deletion	Chr8	10709283	10709285	2
Deletion	Chr10	14644999	14645047	48
Deletion	Chr11	15877001	15996000	118999	10
Deletion	Chr12	18920585	18920587	2
Deletion	Chr2	22224307	22224322	15
Deletion	Chr2	25119001	25145000	25999	2
Deletion	Chr2	26167003	26167005	2
Deletion	Chr1	33897240	33897243	3
Deletion	Chr3	36556547	36556549	2
Deletion	Chr2	36702612	36702613	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes