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Mutant Information

Mutant Name	FN804-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN804-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 793534 C-T Hetero INTERGENIC
SBS Chr1 18037272 A-T Homo INTERGENIC
SBS Chr1 20760231 G-C Homo INTERGENIC
SBS Chr1 39141676 T-C Homo UTR_5_PRIME
SBS Chr1 39141677 G-C Homo UTR_5_PRIME
SBS Chr2 4015249 C-T Hetero INTERGENIC
SBS Chr2 14003800 G-A Hetero INTERGENIC
SBS Chr2 24865242 C-T Hetero INTERGENIC
SBS Chr2 25486144 T-A Homo UTR_3_PRIME
SBS Chr3 19473280 C-G Hetero INTERGENIC
SBS Chr3 20598078 T-A Hetero INTERGENIC
SBS Chr3 20598080 A-T Hetero INTERGENIC
SBS Chr3 24169740 T-A Hetero INTERGENIC
SBS Chr3 24809610 G-A Hetero INTERGENIC
SBS Chr4 1480101 G-A Hetero INTERGENIC
SBS Chr4 17785835 G-C Hetero INTERGENIC
SBS Chr5 7043821 T-C Hetero UTR_3_PRIME
SBS Chr5 7306407 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g073300
SBS Chr5 18539974 G-A Homo INTERGENIC
SBS Chr5 21736704 G-T Homo INTERGENIC
SBS Chr5 25682342 C-A Hetero INTERGENIC
SBS Chr6 14376668 G-A Homo INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr6 17613074 A-C Homo INTRON
SBS Chr6 22286306 G-T Homo INTERGENIC
SBS Chr6 26354120 C-T Hetero INTERGENIC
SBS Chr7 6154415 G-C Hetero INTERGENIC
SBS Chr7 11679020 T-C Hetero INTERGENIC
SBS Chr7 11679021 A-C Hetero INTERGENIC
SBS Chr7 12405302 A-T Hetero INTERGENIC
SBS Chr7 14188109 C-G Hetero INTERGENIC
SBS Chr7 21919684 T-C Hetero INTERGENIC
SBS Chr7 28241671 A-G Hetero INTERGENIC
SBS Chr8 14236347 C-T Hetero INTERGENIC
SBS Chr8 14236348 C-T Hetero INTERGENIC
SBS Chr8 27214199 G-C Hetero SYNONYMOUS_CODING
SBS Chr9 6898474 G-A Hetero INTERGENIC
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr9 17525637 G-T Hetero INTERGENIC
SBS Chr10 2044890 C-A Homo INTERGENIC
SBS Chr12 6425138 G-A Hetero INTRON
SBS Chr12 18975756 A-T Homo INTERGENIC
SBS Chr12 18975757 A-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4831893 4831895 2
Deletion Chr1 5895279 5895282 3
Deletion Chr3 6918885 6918892 7
Deletion Chr11 9517965 9517974 9
Deletion Chr2 9782224 9782226 2
Deletion Chr7 11143285 11143286 1
Deletion Chr1 13199484 13199489 5
Deletion Chr5 15447051 15447059 8
Deletion Chr4 15736001 15784000 47999 2
Deletion Chr1 17967836 17967846 10
Deletion Chr12 19025389 19025405 16
Deletion Chr10 19546698 19546706 8 OsKitaake10g143700
Deletion Chr6 20553534 20553536 2
Deletion Chr2 32669218 32669224 6
Deletion Chr1 35505892 35505900 8

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765202 2
Insertion Chr2 23270652 23270655 2
Insertion Chr6 24598872 24598875 2
Insertion Chr7 9091784 9091787 2
Insertion Chr9 15224206 15224208 1
Insertion Chr8 1396065 1396067 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 10279203 10282143
Inversion Chr2 10279207 10282160

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	793534	C-T	Hetero	INTERGENIC
SBS	Chr1	18037272	A-T	Homo	INTERGENIC
SBS	Chr1	20760231	G-C	Homo	INTERGENIC
SBS	Chr1	39141676	T-C	Homo	UTR_5_PRIME
SBS	Chr1	39141677	G-C	Homo	UTR_5_PRIME
SBS	Chr2	4015249	C-T	Hetero	INTERGENIC
SBS	Chr2	14003800	G-A	Hetero	INTERGENIC
SBS	Chr2	24865242	C-T	Hetero	INTERGENIC
SBS	Chr2	25486144	T-A	Homo	UTR_3_PRIME
SBS	Chr3	19473280	C-G	Hetero	INTERGENIC
SBS	Chr3	20598078	T-A	Hetero	INTERGENIC
SBS	Chr3	20598080	A-T	Hetero	INTERGENIC
SBS	Chr3	24169740	T-A	Hetero	INTERGENIC
SBS	Chr3	24809610	G-A	Hetero	INTERGENIC
SBS	Chr4	1480101	G-A	Hetero	INTERGENIC
SBS	Chr4	17785835	G-C	Hetero	INTERGENIC
SBS	Chr5	7043821	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	7306407	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g073300
SBS	Chr5	18539974	G-A	Homo	INTERGENIC
SBS	Chr5	21736704	G-T	Homo	INTERGENIC
SBS	Chr5	25682342	C-A	Hetero	INTERGENIC
SBS	Chr6	14376668	G-A	Homo	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr6	17613074	A-C	Homo	INTRON
SBS	Chr6	22286306	G-T	Homo	INTERGENIC
SBS	Chr6	26354120	C-T	Hetero	INTERGENIC
SBS	Chr7	6154415	G-C	Hetero	INTERGENIC
SBS	Chr7	11679020	T-C	Hetero	INTERGENIC
SBS	Chr7	11679021	A-C	Hetero	INTERGENIC
SBS	Chr7	12405302	A-T	Hetero	INTERGENIC
SBS	Chr7	14188109	C-G	Hetero	INTERGENIC
SBS	Chr7	21919684	T-C	Hetero	INTERGENIC
SBS	Chr7	28241671	A-G	Hetero	INTERGENIC
SBS	Chr8	14236347	C-T	Hetero	INTERGENIC
SBS	Chr8	14236348	C-T	Hetero	INTERGENIC
SBS	Chr8	27214199	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	6898474	G-A	Hetero	INTERGENIC
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr9	17525637	G-T	Hetero	INTERGENIC
SBS	Chr10	2044890	C-A	Homo	INTERGENIC
SBS	Chr12	6425138	G-A	Hetero	INTRON
SBS	Chr12	18975756	A-T	Homo	INTERGENIC
SBS	Chr12	18975757	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4831893	4831895	2
Deletion	Chr1	5895279	5895282	3
Deletion	Chr3	6918885	6918892	7
Deletion	Chr11	9517965	9517974	9
Deletion	Chr2	9782224	9782226	2
Deletion	Chr7	11143285	11143286	1
Deletion	Chr1	13199484	13199489	5
Deletion	Chr5	15447051	15447059	8
Deletion	Chr4	15736001	15784000	47999	2
Deletion	Chr1	17967836	17967846	10
Deletion	Chr12	19025389	19025405	16
Deletion	Chr10	19546698	19546706	8	OsKitaake10g143700
Deletion	Chr6	20553534	20553536	2
Deletion	Chr2	32669218	32669224	6
Deletion	Chr1	35505892	35505900	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	10279203	10282143
Inversion	Chr2	10279207	10282160

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes