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Mutant Information

Mutant Name	FN805-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN805-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 353582 T-C Hetero INTRON
SBS Chr1 12379932 T-A Hetero INTERGENIC
SBS Chr1 12379933 T-A Hetero INTERGENIC
SBS Chr1 13408782 C-G Hetero INTERGENIC
SBS Chr1 15756081 C-T Hetero INTERGENIC
SBS Chr1 17309182 G-A Hetero INTERGENIC
SBS Chr1 25835794 A-G Hetero INTERGENIC
SBS Chr2 13762257 G-A Hetero INTERGENIC
SBS Chr2 20676107 T-A Homo INTERGENIC
SBS Chr3 6120630 A-T Hetero INTRON
SBS Chr3 6120650 A-G Hetero INTRON
SBS Chr3 8521343 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 15561571 G-A Hetero INTERGENIC
SBS Chr3 25418137 G-A Hetero INTERGENIC
SBS Chr4 17839281 A-G Homo INTERGENIC
SBS Chr4 19492940 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g100300
SBS Chr4 20297046 A-G Hetero INTERGENIC
SBS Chr4 27576652 T-A Hetero INTRON
SBS Chr4 33711710 C-T Homo INTRON
SBS Chr5 20240646 G-A Hetero INTERGENIC
SBS Chr5 22930855 C-T Hetero INTERGENIC
SBS Chr6 21835084 G-C Hetero INTERGENIC
SBS Chr7 17579228 C-G Hetero INTERGENIC
SBS Chr8 736841 A-T Homo INTRON
SBS Chr8 736842 A-T Homo INTRON
SBS Chr8 14779636 C-T Hetero INTERGENIC
SBS Chr9 9372726 C-G Hetero INTERGENIC
SBS Chr9 16953084 G-T Homo INTERGENIC
SBS Chr10 6498474 A-G Homo INTERGENIC
SBS Chr11 24222203 G-A Hetero INTERGENIC
SBS Chr11 28589877 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g234200

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5850800 5850815 15
Deletion Chr9 7913581 7913585 4
Deletion Chr7 8390686 8390691 5
Deletion Chr11 11004595 11004601 6
Deletion Chr5 11421001 11564000 142999 OsKitaake05g095600
Deletion Chr5 11565730 11565732 2
Deletion Chr1 12408148 12408152 4
Deletion Chr7 12991964 12992031 67
Deletion Chr5 13717012 13717015 3
Deletion Chr6 15041636 15041637 1
Deletion Chr7 17483448 17483449 1 OsKitaake07g142100
Deletion Chr1 18350911 18350914 3
Deletion Chr12 20734708 20734710 2
Deletion Chr6 21391001 21419000 27999 4
Deletion Chr4 22472177 22472178 1
Deletion Chr11 22879901 22879911 10 OsKitaake11g181000
Deletion Chr6 27981001 28011000 29999 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 6608187 6608190 2
Insertion Chr4 28102484 28102487 2
Insertion Chr7 12248929 12248931 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 18579452 18681913
Inversion Chr5 18579453 18681913

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 26853293 Chr1 12345979 OsKitaake03g179800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	353582	T-C	Hetero	INTRON
SBS	Chr1	12379932	T-A	Hetero	INTERGENIC
SBS	Chr1	12379933	T-A	Hetero	INTERGENIC
SBS	Chr1	13408782	C-G	Hetero	INTERGENIC
SBS	Chr1	15756081	C-T	Hetero	INTERGENIC
SBS	Chr1	17309182	G-A	Hetero	INTERGENIC
SBS	Chr1	25835794	A-G	Hetero	INTERGENIC
SBS	Chr2	13762257	G-A	Hetero	INTERGENIC
SBS	Chr2	20676107	T-A	Homo	INTERGENIC
SBS	Chr3	6120630	A-T	Hetero	INTRON
SBS	Chr3	6120650	A-G	Hetero	INTRON
SBS	Chr3	8521343	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	15561571	G-A	Hetero	INTERGENIC
SBS	Chr3	25418137	G-A	Hetero	INTERGENIC
SBS	Chr4	17839281	A-G	Homo	INTERGENIC
SBS	Chr4	19492940	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g100300
SBS	Chr4	20297046	A-G	Hetero	INTERGENIC
SBS	Chr4	27576652	T-A	Hetero	INTRON
SBS	Chr4	33711710	C-T	Homo	INTRON
SBS	Chr5	20240646	G-A	Hetero	INTERGENIC
SBS	Chr5	22930855	C-T	Hetero	INTERGENIC
SBS	Chr6	21835084	G-C	Hetero	INTERGENIC
SBS	Chr7	17579228	C-G	Hetero	INTERGENIC
SBS	Chr8	736841	A-T	Homo	INTRON
SBS	Chr8	736842	A-T	Homo	INTRON
SBS	Chr8	14779636	C-T	Hetero	INTERGENIC
SBS	Chr9	9372726	C-G	Hetero	INTERGENIC
SBS	Chr9	16953084	G-T	Homo	INTERGENIC
SBS	Chr10	6498474	A-G	Homo	INTERGENIC
SBS	Chr11	24222203	G-A	Hetero	INTERGENIC
SBS	Chr11	28589877	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g234200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5850800	5850815	15
Deletion	Chr9	7913581	7913585	4
Deletion	Chr7	8390686	8390691	5
Deletion	Chr11	11004595	11004601	6
Deletion	Chr5	11421001	11564000	142999	OsKitaake05g095600
Deletion	Chr5	11565730	11565732	2
Deletion	Chr1	12408148	12408152	4
Deletion	Chr7	12991964	12992031	67
Deletion	Chr5	13717012	13717015	3
Deletion	Chr6	15041636	15041637	1
Deletion	Chr7	17483448	17483449	1	OsKitaake07g142100
Deletion	Chr1	18350911	18350914	3
Deletion	Chr12	20734708	20734710	2
Deletion	Chr6	21391001	21419000	27999	4
Deletion	Chr4	22472177	22472178	1
Deletion	Chr11	22879901	22879911	10	OsKitaake11g181000
Deletion	Chr6	27981001	28011000	29999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	18579452	18681913
Inversion	Chr5	18579453	18681913

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes