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Mutant Information

Mutant Name	FN806-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN806-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25050042 A-T Homo INTERGENIC
SBS Chr1 29413561 T-A Hetero INTERGENIC
SBS Chr1 29413563 T-C Hetero INTERGENIC
SBS Chr1 32125544 C-T Hetero INTERGENIC
SBS Chr1 34361579 T-C Hetero INTERGENIC
SBS Chr2 10752911 G-T Hetero INTERGENIC
SBS Chr2 27727716 T-C Homo INTERGENIC
SBS Chr3 10717387 G-T Homo UTR_3_PRIME
SBS Chr3 11671936 A-T Hetero INTERGENIC
SBS Chr4 10090265 G-T Homo INTERGENIC
SBS Chr4 17630860 C-T Homo INTERGENIC
SBS Chr4 20894490 G-A Hetero INTERGENIC
SBS Chr5 8590879 C-T Homo INTERGENIC
SBS Chr5 11518554 A-T Homo INTERGENIC
SBS Chr5 19148780 A-T Hetero INTERGENIC
SBS Chr6 7074296 T-A Homo INTERGENIC
SBS Chr6 7591574 G-C Homo INTERGENIC
SBS Chr7 26921423 C-A Homo UTR_3_PRIME
SBS Chr8 17408266 C-A Hetero INTERGENIC
SBS Chr8 17568513 A-C Hetero INTRON
SBS Chr8 27729037 C-T Hetero INTERGENIC
SBS Chr9 1565685 G-T Hetero INTERGENIC
SBS Chr9 4889900 A-C Hetero UTR_3_PRIME
SBS Chr9 5071208 G-A Hetero INTERGENIC
SBS Chr9 6772087 A-G Hetero INTERGENIC
SBS Chr9 10063508 G-A Hetero INTERGENIC
SBS Chr9 10177828 T-A Hetero INTERGENIC
SBS Chr9 10243267 G-A Hetero INTERGENIC
SBS Chr9 14622518 A-T Hetero UTR_3_PRIME
SBS Chr9 14622521 T-G Hetero UTR_3_PRIME
SBS Chr9 14622523 C-T Hetero UTR_3_PRIME
SBS Chr10 3175192 A-T Homo INTERGENIC
SBS Chr10 3842298 A-T Homo INTERGENIC
SBS Chr11 1352569 T-A Hetero INTRON
SBS Chr11 1352570 C-A Hetero INTRON
SBS Chr11 5804649 A-T Hetero INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 25096756 C-T Hetero INTERGENIC
SBS Chr12 3510599 T-C Hetero INTERGENIC
SBS Chr12 24126076 A-T Homo INTERGENIC
SBS Chr12 25217379 G-A Homo INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1992387 1992388 1
Deletion Chr12 7999508 7999510 2
Deletion Chr4 10452163 10452318 155
Deletion Chr12 12697432 12697442 10
Deletion Chr6 13176317 13176318 1
Deletion Chr6 14302665 14302667 2
Deletion Chr2 14618588 14618596 8
Deletion Chr8 14683001 14704000 20999 2
Deletion Chr8 14709001 14725000 15999
Deletion Chr5 17865001 17912000 46999 4
Deletion Chr12 19547884 19547898 14
Deletion Chr7 20173729 20173730 1
Deletion Chr12 22165153 22165156 3
Deletion Chr4 22584401 22584402 1
Deletion Chr3 36921052 36921054 2
Deletion Chr1 40218416 40218418 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 30017678 30017681 2
Insertion Chr8 21770682 21770684 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 13274057 13677333 2
Inversion Chr5 16643750 16784489

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 3700407 Chr1 19662207 OsKitaake01g195800
Translocation Chr4 3700419 Chr1 19661979 OsKitaake01g195800
Translocation Chr9 13274054 Chr8 14729057 OsKitaake09g088400
Translocation Chr9 13677322 Chr8 14725321 OsKitaake09g091800
Translocation Chr4 36536379 Chr1 5131800 OsKitaake01g067500
Translocation Chr4 36541904 Chr1 5131781 OsKitaake01g067500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25050042	A-T	Homo	INTERGENIC
SBS	Chr1	29413561	T-A	Hetero	INTERGENIC
SBS	Chr1	29413563	T-C	Hetero	INTERGENIC
SBS	Chr1	32125544	C-T	Hetero	INTERGENIC
SBS	Chr1	34361579	T-C	Hetero	INTERGENIC
SBS	Chr2	10752911	G-T	Hetero	INTERGENIC
SBS	Chr2	27727716	T-C	Homo	INTERGENIC
SBS	Chr3	10717387	G-T	Homo	UTR_3_PRIME
SBS	Chr3	11671936	A-T	Hetero	INTERGENIC
SBS	Chr4	10090265	G-T	Homo	INTERGENIC
SBS	Chr4	17630860	C-T	Homo	INTERGENIC
SBS	Chr4	20894490	G-A	Hetero	INTERGENIC
SBS	Chr5	8590879	C-T	Homo	INTERGENIC
SBS	Chr5	11518554	A-T	Homo	INTERGENIC
SBS	Chr5	19148780	A-T	Hetero	INTERGENIC
SBS	Chr6	7074296	T-A	Homo	INTERGENIC
SBS	Chr6	7591574	G-C	Homo	INTERGENIC
SBS	Chr7	26921423	C-A	Homo	UTR_3_PRIME
SBS	Chr8	17408266	C-A	Hetero	INTERGENIC
SBS	Chr8	17568513	A-C	Hetero	INTRON
SBS	Chr8	27729037	C-T	Hetero	INTERGENIC
SBS	Chr9	1565685	G-T	Hetero	INTERGENIC
SBS	Chr9	4889900	A-C	Hetero	UTR_3_PRIME
SBS	Chr9	5071208	G-A	Hetero	INTERGENIC
SBS	Chr9	6772087	A-G	Hetero	INTERGENIC
SBS	Chr9	10063508	G-A	Hetero	INTERGENIC
SBS	Chr9	10177828	T-A	Hetero	INTERGENIC
SBS	Chr9	10243267	G-A	Hetero	INTERGENIC
SBS	Chr9	14622518	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	14622521	T-G	Hetero	UTR_3_PRIME
SBS	Chr9	14622523	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	3175192	A-T	Homo	INTERGENIC
SBS	Chr10	3842298	A-T	Homo	INTERGENIC
SBS	Chr11	1352569	T-A	Hetero	INTRON
SBS	Chr11	1352570	C-A	Hetero	INTRON
SBS	Chr11	5804649	A-T	Hetero	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Hetero	INTERGENIC
SBS	Chr12	3510599	T-C	Hetero	INTERGENIC
SBS	Chr12	24126076	A-T	Homo	INTERGENIC
SBS	Chr12	25217379	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1992387	1992388	1
Deletion	Chr12	7999508	7999510	2
Deletion	Chr4	10452163	10452318	155
Deletion	Chr12	12697432	12697442	10
Deletion	Chr6	13176317	13176318	1
Deletion	Chr6	14302665	14302667	2
Deletion	Chr2	14618588	14618596	8
Deletion	Chr8	14683001	14704000	20999	2
Deletion	Chr8	14709001	14725000	15999
Deletion	Chr5	17865001	17912000	46999	4
Deletion	Chr12	19547884	19547898	14
Deletion	Chr7	20173729	20173730	1
Deletion	Chr12	22165153	22165156	3
Deletion	Chr4	22584401	22584402	1
Deletion	Chr3	36921052	36921054	2
Deletion	Chr1	40218416	40218418	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13274057	13677333	2
Inversion	Chr5	16643750	16784489

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes