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Mutant Information

Mutant Name	FN808-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN808-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 6620372 C-A Homo INTERGENIC
SBS Chr2 6620373 C-A Homo INTERGENIC
SBS Chr2 6620374 T-C Homo INTERGENIC
SBS Chr2 26467986 T-A Homo INTERGENIC
SBS Chr2 31816449 A-T Hetero UTR_5_PRIME
SBS Chr2 34072969 T-A Hetero INTERGENIC
SBS Chr3 35743390 C-T Hetero INTERGENIC
SBS Chr4 26201719 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g185900
SBS Chr5 7822026 T-C Homo INTERGENIC
SBS Chr6 15898305 C-T Hetero STOP_GAINED OsKitaake06g153500
SBS Chr6 20712764 A-T Hetero INTRON
SBS Chr7 4203248 T-C Hetero INTERGENIC
SBS Chr7 13874799 C-T Hetero INTERGENIC
SBS Chr8 8960245 C-T Homo INTERGENIC
SBS Chr8 8960246 C-T Homo INTERGENIC
SBS Chr8 15351563 A-G Homo INTERGENIC
SBS Chr9 2649802 G-T Homo INTERGENIC
SBS Chr9 16602890 C-T Hetero INTERGENIC
SBS Chr10 7721560 C-A Hetero INTERGENIC
SBS Chr10 9100375 C-T Homo INTERGENIC
SBS Chr10 11692793 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g069900
SBS Chr10 14281134 C-T Hetero INTERGENIC
SBS Chr10 15329405 A-T Hetero INTERGENIC
SBS Chr10 15329406 A-T Hetero INTERGENIC
SBS Chr10 16117863 G-C Hetero INTERGENIC
SBS Chr11 12999962 G-T Homo INTERGENIC
SBS Chr12 9120358 T-A Hetero INTERGENIC
SBS Chr12 18991439 T-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2619774 2619793 19
Deletion Chr4 12884314 12884327 13
Deletion Chr7 16817407 16817409 2
Deletion Chr11 23173815 23173817 2
Deletion Chr7 24134979 24134993 14
Deletion Chr1 25933910 25933912 2
Deletion Chr2 27293012 27293021 9
Deletion Chr5 29292084 29292086 2
Deletion Chr3 31983620 31983622 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41466522 41466527 4
Insertion Chr1 43985976 43985979 2
Insertion Chr9 15777002 15777005 2
Insertion Chr11 26206332 26206335 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 6131408 6131722
Inversion Chr4 33674357 34474969

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	6620372	C-A	Homo	INTERGENIC
SBS	Chr2	6620373	C-A	Homo	INTERGENIC
SBS	Chr2	6620374	T-C	Homo	INTERGENIC
SBS	Chr2	26467986	T-A	Homo	INTERGENIC
SBS	Chr2	31816449	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	34072969	T-A	Hetero	INTERGENIC
SBS	Chr3	35743390	C-T	Hetero	INTERGENIC
SBS	Chr4	26201719	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g185900
SBS	Chr5	7822026	T-C	Homo	INTERGENIC
SBS	Chr6	15898305	C-T	Hetero	STOP_GAINED	OsKitaake06g153500
SBS	Chr6	20712764	A-T	Hetero	INTRON
SBS	Chr7	4203248	T-C	Hetero	INTERGENIC
SBS	Chr7	13874799	C-T	Hetero	INTERGENIC
SBS	Chr8	8960245	C-T	Homo	INTERGENIC
SBS	Chr8	8960246	C-T	Homo	INTERGENIC
SBS	Chr8	15351563	A-G	Homo	INTERGENIC
SBS	Chr9	2649802	G-T	Homo	INTERGENIC
SBS	Chr9	16602890	C-T	Hetero	INTERGENIC
SBS	Chr10	7721560	C-A	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Homo	INTERGENIC
SBS	Chr10	11692793	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g069900
SBS	Chr10	14281134	C-T	Hetero	INTERGENIC
SBS	Chr10	15329405	A-T	Hetero	INTERGENIC
SBS	Chr10	15329406	A-T	Hetero	INTERGENIC
SBS	Chr10	16117863	G-C	Hetero	INTERGENIC
SBS	Chr11	12999962	G-T	Homo	INTERGENIC
SBS	Chr12	9120358	T-A	Hetero	INTERGENIC
SBS	Chr12	18991439	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2619774	2619793	19
Deletion	Chr4	12884314	12884327	13
Deletion	Chr7	16817407	16817409	2
Deletion	Chr11	23173815	23173817	2
Deletion	Chr7	24134979	24134993	14
Deletion	Chr1	25933910	25933912	2
Deletion	Chr2	27293012	27293021	9
Deletion	Chr5	29292084	29292086	2
Deletion	Chr3	31983620	31983622	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6131408	6131722
Inversion	Chr4	33674357	34474969

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes