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| Mutant Information |
|---|
| Mutant Name | FN809-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN809-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 34649115 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4742888 | T-C | Homo | INTRON | |
| SBS | Chr2 | 33061144 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36328966 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21558 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8684942 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 28111977 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 28780774 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22262534 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 34997322 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12208052 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17046509 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2663243 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 2701480 | G-A | Homo | INTRON | |
| SBS | Chr6 | 11416746 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr7 | 9887857 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 16372000 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5016273 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 16232136 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 2495947 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17827628 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g135400 |
| SBS | Chr10 | 11176301 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 13890858 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14754812 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14754818 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 15756232 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g102900 |
| SBS | Chr10 | 18807511 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1981510 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4607942 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22476135 | C-T | Homo | INTRON | |
| SBS | Chr12 | 22667230 | A-T | Homo | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 454328 | 454333 | 5 | |
| Deletion | Chr1 | 2658362 | 2658363 | 1 | |
| Deletion | Chr3 | 5118093 | 5118344 | 251 | |
| Deletion | Chr3 | 7110908 | 7110910 | 2 | |
| Deletion | Chr1 | 7484112 | 7484114 | 2 | |
| Deletion | Chr7 | 9887900 | 9887916 | 16 | |
| Deletion | Chr11 | 14293199 | 14293214 | 15 | |
| Deletion | Chr1 | 20480899 | 20480901 | 2 | |
| Deletion | Chr12 | 21042100 | 21042103 | 3 | |
| Deletion | Chr4 | 22719382 | 22719384 | 2 | OsKitaake04g135100 |
| Deletion | Chr1 | 24835056 | 24835077 | 21 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 15001257 | 15001260 | 2 | |
| Insertion | Chr5 | 20291898 | 20291901 | 2 | |
| Insertion | Chr11 | 6420656 | 6420659 | 2 |