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Mutant Information

Mutant Name	FN810-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN810-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 863910 T-C Hetero INTERGENIC
SBS Chr1 8362880 G-A Hetero INTRON
SBS Chr1 14362606 G-A Hetero INTERGENIC
SBS Chr1 18910221 C-T Homo INTERGENIC
SBS Chr2 11154441 T-A Hetero INTERGENIC
SBS Chr2 26200639 A-T Hetero INTERGENIC
SBS Chr2 26200640 A-T Hetero INTERGENIC
SBS Chr2 28190084 T-G Homo INTERGENIC
SBS Chr2 32943490 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g338600
SBS Chr3 8567662 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g117400
SBS Chr3 8567663 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 19472563 A-T Hetero INTERGENIC
SBS Chr4 1676263 T-G Hetero INTERGENIC
SBS Chr4 20826134 C-T Hetero INTERGENIC
SBS Chr5 5089950 G-A Homo INTERGENIC
SBS Chr5 5846493 C-A Homo INTERGENIC
SBS Chr5 20582598 T-A Homo INTERGENIC
SBS Chr5 29356487 G-A Homo INTERGENIC
SBS Chr6 1755595 A-C Hetero INTERGENIC
SBS Chr6 24104967 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g213500
SBS Chr7 6443580 G-A Hetero INTERGENIC
SBS Chr7 6674804 T-C Hetero INTERGENIC
SBS Chr7 12254799 C-T Hetero INTERGENIC
SBS Chr7 17348861 A-G Hetero START_GAINED
SBS Chr7 18036909 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g145300
SBS Chr7 26985048 G-A Homo INTERGENIC
SBS Chr8 9766375 C-T Hetero INTERGENIC
SBS Chr8 20143499 G-T Hetero UTR_3_PRIME
SBS Chr8 20161715 A-G Hetero INTERGENIC
SBS Chr9 2032393 C-G Homo INTERGENIC
SBS Chr9 11907800 C-A Homo INTERGENIC
SBS Chr9 18510493 G-A Homo INTERGENIC
SBS Chr10 3384973 T-C Homo INTERGENIC
SBS Chr10 3384980 G-A Homo INTERGENIC
SBS Chr11 9170024 G-A Homo INTERGENIC
SBS Chr11 18907317 A-C Hetero INTERGENIC
SBS Chr11 20987470 A-T Homo INTRON
SBS Chr12 8010630 G-A Homo INTERGENIC
SBS Chr12 8099624 T-C Homo INTERGENIC
SBS Chr12 22436871 G-A Hetero INTERGENIC
SBS Chr12 22630487 C-T Hetero INTRON
SBS Chr12 25852905 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 25852906 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g213600

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1790001 1807000 16999 3
Deletion Chr2 3002104 3002114 10
Deletion Chr9 4146758 4146766 8
Deletion Chr11 8386266 8386267 1
Deletion Chr5 10720502 10720512 10
Deletion Chr11 11243223 11243225 2
Deletion Chr10 12022204 12022214 10
Deletion Chr4 15894777 15894778 1
Deletion Chr5 16002768 16002874 106
Deletion Chr10 16218492 16218501 9
Deletion Chr4 18010587 18010588 1
Deletion Chr12 21002445 21002447 2
Deletion Chr7 28506100 28506103 3
Deletion Chr1 29202234 29202243 9
Deletion Chr2 32533360 32533362 2
Deletion Chr2 36599576 36599594 18
Deletion Chr1 41148124 41148126 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2580920 2580923 2
Insertion Chr9 3278236 3278238 1
Insertion Chr12 11747333 11747336 2
Insertion Chr3 16744382 16744384 1
Insertion Chr11 24530497 24530501 3

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 5119109 5339718
Inversion Chr8 19729555 20329379 OsKitaake08g150100
Inversion Chr8 19729557 20329378 OsKitaake08g150100
Inversion Chr12 25781354 26205025 OsKitaake12g217100
Inversion Chr12 25781360 26098809
Inversion Chr12 25930302 26098803 OsKitaake12g214500
Inversion Chr12 25930436 26205026 2

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2648085 Chr3 3635888
Translocation Chr11 2648102 Chr3 3636326
Translocation Chr3 3634221 Chr2 20416069 OsKitaake03g051400
Translocation Chr7 16476651 Chr4 2238687 2
Translocation Chr7 16476966 Chr4 2238677 2
Translocation Chr4 16683592 Chr1 15954133 OsKitaake04g081900
Translocation Chr12 25930317 Chr7 13424069 OsKitaake12g214500
Translocation Chr12 25930414 Chr7 13424070 OsKitaake12g214500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	863910	T-C	Hetero	INTERGENIC
SBS	Chr1	8362880	G-A	Hetero	INTRON
SBS	Chr1	14362606	G-A	Hetero	INTERGENIC
SBS	Chr1	18910221	C-T	Homo	INTERGENIC
SBS	Chr2	11154441	T-A	Hetero	INTERGENIC
SBS	Chr2	26200639	A-T	Hetero	INTERGENIC
SBS	Chr2	26200640	A-T	Hetero	INTERGENIC
SBS	Chr2	28190084	T-G	Homo	INTERGENIC
SBS	Chr2	32943490	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g338600
SBS	Chr3	8567662	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g117400
SBS	Chr3	8567663	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	19472563	A-T	Hetero	INTERGENIC
SBS	Chr4	1676263	T-G	Hetero	INTERGENIC
SBS	Chr4	20826134	C-T	Hetero	INTERGENIC
SBS	Chr5	5089950	G-A	Homo	INTERGENIC
SBS	Chr5	5846493	C-A	Homo	INTERGENIC
SBS	Chr5	20582598	T-A	Homo	INTERGENIC
SBS	Chr5	29356487	G-A	Homo	INTERGENIC
SBS	Chr6	1755595	A-C	Hetero	INTERGENIC
SBS	Chr6	24104967	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g213500
SBS	Chr7	6443580	G-A	Hetero	INTERGENIC
SBS	Chr7	6674804	T-C	Hetero	INTERGENIC
SBS	Chr7	12254799	C-T	Hetero	INTERGENIC
SBS	Chr7	17348861	A-G	Hetero	START_GAINED
SBS	Chr7	18036909	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g145300
SBS	Chr7	26985048	G-A	Homo	INTERGENIC
SBS	Chr8	9766375	C-T	Hetero	INTERGENIC
SBS	Chr8	20143499	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	20161715	A-G	Hetero	INTERGENIC
SBS	Chr9	2032393	C-G	Homo	INTERGENIC
SBS	Chr9	11907800	C-A	Homo	INTERGENIC
SBS	Chr9	18510493	G-A	Homo	INTERGENIC
SBS	Chr10	3384973	T-C	Homo	INTERGENIC
SBS	Chr10	3384980	G-A	Homo	INTERGENIC
SBS	Chr11	9170024	G-A	Homo	INTERGENIC
SBS	Chr11	18907317	A-C	Hetero	INTERGENIC
SBS	Chr11	20987470	A-T	Homo	INTRON
SBS	Chr12	8010630	G-A	Homo	INTERGENIC
SBS	Chr12	8099624	T-C	Homo	INTERGENIC
SBS	Chr12	22436871	G-A	Hetero	INTERGENIC
SBS	Chr12	22630487	C-T	Hetero	INTRON
SBS	Chr12	25852905	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	25852906	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g213600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1790001	1807000	16999	3
Deletion	Chr2	3002104	3002114	10
Deletion	Chr9	4146758	4146766	8
Deletion	Chr11	8386266	8386267	1
Deletion	Chr5	10720502	10720512	10
Deletion	Chr11	11243223	11243225	2
Deletion	Chr10	12022204	12022214	10
Deletion	Chr4	15894777	15894778	1
Deletion	Chr5	16002768	16002874	106
Deletion	Chr10	16218492	16218501	9
Deletion	Chr4	18010587	18010588	1
Deletion	Chr12	21002445	21002447	2
Deletion	Chr7	28506100	28506103	3
Deletion	Chr1	29202234	29202243	9
Deletion	Chr2	32533360	32533362	2
Deletion	Chr2	36599576	36599594	18
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5119109	5339718
Inversion	Chr8	19729555	20329379	OsKitaake08g150100
Inversion	Chr8	19729557	20329378	OsKitaake08g150100
Inversion	Chr12	25781354	26205025	OsKitaake12g217100
Inversion	Chr12	25781360	26098809
Inversion	Chr12	25930302	26098803	OsKitaake12g214500
Inversion	Chr12	25930436	26205026	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes