Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN812-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN812-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5155061 | A-C | Homo | INTRON | |
| SBS | Chr1 | 36156721 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 43612456 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g484300 |
| SBS | Chr2 | 19934456 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19465200 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 23053561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35018454 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35695586 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8240694 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 19586120 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 34901981 | G-A | Homo | INTRON | |
| SBS | Chr5 | 11142337 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 4280275 | G-A | Homo | INTRON | |
| SBS | Chr6 | 21209244 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14409731 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28571849 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 7779 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10601806 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g066200 |
| SBS | Chr9 | 16214972 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20605804 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14354877 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g120100 |
| SBS | Chr11 | 21393539 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21573759 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g170300 |
| SBS | Chr11 | 26633622 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 11654589 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19465248 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25841494 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 478001 | 504000 | 25999 | OsKitaake05g005866 |
| Deletion | Chr6 | 1489111 | 1489117 | 6 | |
| Deletion | Chr6 | 4278286 | 4278292 | 6 | OsKitaake06g059100 |
| Deletion | Chr11 | 4886911 | 4886921 | 10 | |
| Deletion | Chr11 | 12472477 | 12472529 | 52 | |
| Deletion | Chr10 | 12834913 | 12834915 | 2 | |
| Deletion | Chr5 | 15760565 | 15760567 | 2 | |
| Deletion | Chr5 | 19426584 | 19426591 | 7 | |
| Deletion | Chr2 | 19891371 | 19891374 | 3 | |
| Deletion | Chr2 | 20118612 | 20118620 | 8 | |
| Deletion | Chr6 | 20204336 | 20204384 | 48 | |
| Deletion | Chr4 | 25977411 | 25977412 | 1 | OsKitaake04g181900 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 5256844 | 5259225 | OsKitaake07g064100 |
| Inversion | Chr7 | 5256858 | 5259227 | OsKitaake07g064100 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8629694 | Chr2 | 13621543 |