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Mutant Information

Mutant Name	FN818-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN818-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19434718 G-A Homo INTRON
SBS Chr1 19702063 A-T Homo INTERGENIC
SBS Chr1 26563513 G-A Hetero INTERGENIC
SBS Chr1 31289338 T-C Homo INTERGENIC
SBS Chr2 6118399 G-T Hetero INTERGENIC
SBS Chr2 27179009 C-T Hetero INTERGENIC
SBS Chr2 28219953 T-A Hetero INTRON
SBS Chr3 6063964 C-A Hetero INTERGENIC
SBS Chr3 36965905 A-T Hetero INTERGENIC
SBS Chr4 509881 G-A Hetero UTR_3_PRIME
SBS Chr4 9666885 C-T Hetero INTERGENIC
SBS Chr4 12683800 G-A Hetero UTR_3_PRIME
SBS Chr4 14457869 G-C Hetero INTERGENIC
SBS Chr4 14800208 C-T Hetero INTERGENIC
SBS Chr4 33853438 A-G Hetero INTERGENIC
SBS Chr6 2605975 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 10119599 A-T Hetero INTRON
SBS Chr6 11656262 G-A Hetero INTERGENIC
SBS Chr7 10491057 G-A Homo INTERGENIC
SBS Chr8 8780593 C-G Hetero INTERGENIC
SBS Chr8 17370234 C-A Hetero INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr9 1477974 C-T Hetero INTERGENIC
SBS Chr10 10002313 G-A Hetero INTERGENIC
SBS Chr11 7334440 G-C Hetero INTERGENIC
SBS Chr11 16388467 G-A Homo INTERGENIC
SBS Chr11 27979194 G-T Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 5205201 5205205 4
Deletion Chr11 7334592 7334594 2
Deletion Chr2 10266413 10266415 2
Deletion Chr12 10533985 10534005 20
Deletion Chr11 11351373 11351376 3
Deletion Chr5 12394221 12394224 3
Deletion Chr10 16956965 16956968 3
Deletion Chr11 20392238 20392243 5
Deletion Chr6 20622525 20622527 2
Deletion Chr6 20622542 20622544 2
Deletion Chr6 25282957 25282962 5
Deletion Chr7 26080246 26080247 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 3661025 3661028 2
Insertion Chr11 1173350 1173353 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 28081169 28389516 OsKitaake08g236000
Inversion Chr8 28081211 28389527 OsKitaake08g236000
Inversion Chr8 28162015 28208548 2
Inversion Chr8 28162020 28208555 2
Inversion Chr3 34379316 34479279
Inversion Chr3 34379320 34479277

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 24253850 Chr3 5192692
Translocation Chr4 24253858 Chr3 5192327

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19434718	G-A	Homo	INTRON
SBS	Chr1	19702063	A-T	Homo	INTERGENIC
SBS	Chr1	26563513	G-A	Hetero	INTERGENIC
SBS	Chr1	31289338	T-C	Homo	INTERGENIC
SBS	Chr2	6118399	G-T	Hetero	INTERGENIC
SBS	Chr2	27179009	C-T	Hetero	INTERGENIC
SBS	Chr2	28219953	T-A	Hetero	INTRON
SBS	Chr3	6063964	C-A	Hetero	INTERGENIC
SBS	Chr3	36965905	A-T	Hetero	INTERGENIC
SBS	Chr4	509881	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	9666885	C-T	Hetero	INTERGENIC
SBS	Chr4	12683800	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	14457869	G-C	Hetero	INTERGENIC
SBS	Chr4	14800208	C-T	Hetero	INTERGENIC
SBS	Chr4	33853438	A-G	Hetero	INTERGENIC
SBS	Chr6	2605975	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10119599	A-T	Hetero	INTRON
SBS	Chr6	11656262	G-A	Hetero	INTERGENIC
SBS	Chr7	10491057	G-A	Homo	INTERGENIC
SBS	Chr8	8780593	C-G	Hetero	INTERGENIC
SBS	Chr8	17370234	C-A	Hetero	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr9	1477974	C-T	Hetero	INTERGENIC
SBS	Chr10	10002313	G-A	Hetero	INTERGENIC
SBS	Chr11	7334440	G-C	Hetero	INTERGENIC
SBS	Chr11	16388467	G-A	Homo	INTERGENIC
SBS	Chr11	27979194	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	5205201	5205205	4
Deletion	Chr11	7334592	7334594	2
Deletion	Chr2	10266413	10266415	2
Deletion	Chr12	10533985	10534005	20
Deletion	Chr11	11351373	11351376	3
Deletion	Chr5	12394221	12394224	3
Deletion	Chr10	16956965	16956968	3
Deletion	Chr11	20392238	20392243	5
Deletion	Chr6	20622525	20622527	2
Deletion	Chr6	20622542	20622544	2
Deletion	Chr6	25282957	25282962	5
Deletion	Chr7	26080246	26080247	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	28081169	28389516	OsKitaake08g236000
Inversion	Chr8	28081211	28389527	OsKitaake08g236000
Inversion	Chr8	28162015	28208548	2
Inversion	Chr8	28162020	28208555	2
Inversion	Chr3	34379316	34479279
Inversion	Chr3	34379320	34479277

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes