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Mutant Information

Mutant Name	FN819-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN819-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2581509 G-T Homo UTR_3_PRIME
SBS Chr1 7548634 A-C Hetero INTERGENIC
SBS Chr1 7772917 C-T Hetero INTERGENIC
SBS Chr1 10099340 A-T Hetero INTRON
SBS Chr1 11551781 G-A Hetero INTERGENIC
SBS Chr1 14912759 C-T Hetero INTERGENIC
SBS Chr1 23034920 G-A Homo INTERGENIC
SBS Chr1 36048120 A-G Hetero INTERGENIC
SBS Chr1 40965202 G-A Hetero INTERGENIC
SBS Chr1 41686813 A-G Hetero INTERGENIC
SBS Chr2 9014185 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g112900
SBS Chr3 3609775 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g051000
SBS Chr3 3609776 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g051000
SBS Chr3 10945393 C-T Hetero INTRON
SBS Chr3 15326626 G-A Hetero INTERGENIC
SBS Chr3 18734844 A-T Hetero INTERGENIC
SBS Chr3 20125941 G-A Hetero INTERGENIC
SBS Chr4 11606488 G-A Hetero INTERGENIC
SBS Chr4 13580515 G-C Hetero INTERGENIC
SBS Chr4 24775229 A-T Hetero INTERGENIC
SBS Chr4 28400229 C-G Hetero INTERGENIC
SBS Chr5 5059844 C-T Homo INTERGENIC
SBS Chr5 9209522 C-T Hetero INTERGENIC
SBS Chr5 18889797 C-T Hetero INTERGENIC
SBS Chr5 23792135 G-T Hetero UTR_3_PRIME
SBS Chr6 4950606 G-A Hetero INTERGENIC
SBS Chr6 9230256 A-C Homo INTERGENIC
SBS Chr6 17848836 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g164300
SBS Chr6 21031287 T-C Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 2038276 T-A Hetero INTERGENIC
SBS Chr7 15368326 G-C Hetero INTERGENIC
SBS Chr7 17523860 A-T Hetero INTERGENIC
SBS Chr7 25337320 T-C Hetero INTERGENIC
SBS Chr8 2042799 G-A Hetero INTERGENIC
SBS Chr8 7052135 C-T Hetero INTERGENIC
SBS Chr8 7738229 T-C Homo INTERGENIC
SBS Chr8 8705247 T-C Hetero INTERGENIC
SBS Chr8 9687538 C-G Hetero INTERGENIC
SBS Chr8 12772094 G-A Hetero INTERGENIC
SBS Chr8 15547697 G-A Hetero INTERGENIC
SBS Chr8 16170267 A-T Hetero INTRON
SBS Chr9 14689174 A-T Hetero INTERGENIC
SBS Chr10 1504326 G-T Hetero INTERGENIC
SBS Chr10 1963501 G-A Homo INTERGENIC
SBS Chr10 4090505 A-C Hetero UTR_3_PRIME
SBS Chr10 8938716 C-T Homo INTERGENIC
SBS Chr10 12165241 C-T Hetero INTERGENIC
SBS Chr11 4553736 T-C Hetero INTRON
SBS Chr11 7607491 G-A Homo INTERGENIC
SBS Chr11 8607795 C-T Hetero INTERGENIC
SBS Chr11 15726739 C-A Hetero INTERGENIC
SBS Chr12 5509605 C-T Hetero INTERGENIC
SBS Chr12 9524085 A-T Hetero INTRON
SBS Chr12 9720656 G-A Hetero INTERGENIC
SBS Chr12 10666113 G-T Hetero INTERGENIC
SBS Chr12 12204451 C-A Hetero INTERGENIC
SBS Chr12 13968602 C-T Hetero INTERGENIC
SBS Chr12 14449201 T-C Hetero INTERGENIC
SBS Chr12 16868977 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr10 5511258 5511259 1
Deletion Chr4 6029947 6029951 4 OsKitaake04g030200
Deletion Chr2 7213019 7213021 2
Deletion Chr11 8512566 8512569 3
Deletion Chr10 10299603 10299604 1
Deletion Chr10 16946003 16946004 1
Deletion Chr7 19188586 19188588 2
Deletion Chr1 19205380 19205381 1
Deletion Chr10 21902613 21902614 1
Deletion Chr5 23460810 23460817 7
Deletion Chr5 25854199 25854201 2
Deletion Chr3 27324099 27324111 12
Deletion Chr7 28492576 28492577 1
Deletion Chr3 29477293 29477295 2
Deletion Chr1 40838896 40838900 4 OsKitaake01g444500

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31752713 31752715 1 OsKitaake01g319200
Insertion Chr3 15226880 15226883 2
Insertion Chr3 29373788 29373791 2
Insertion Chr5 20220093 20220096 2
Insertion Chr12 6299822 6299824 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 14547461 15147634 OsKitaake11g121200
Inversion Chr11 14547484 15147638 OsKitaake11g121200

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 20623460 Chr2 25288885

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2581509	G-T	Homo	UTR_3_PRIME
SBS	Chr1	7548634	A-C	Hetero	INTERGENIC
SBS	Chr1	7772917	C-T	Hetero	INTERGENIC
SBS	Chr1	10099340	A-T	Hetero	INTRON
SBS	Chr1	11551781	G-A	Hetero	INTERGENIC
SBS	Chr1	14912759	C-T	Hetero	INTERGENIC
SBS	Chr1	23034920	G-A	Homo	INTERGENIC
SBS	Chr1	36048120	A-G	Hetero	INTERGENIC
SBS	Chr1	40965202	G-A	Hetero	INTERGENIC
SBS	Chr1	41686813	A-G	Hetero	INTERGENIC
SBS	Chr2	9014185	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g112900
SBS	Chr3	3609775	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g051000
SBS	Chr3	3609776	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g051000
SBS	Chr3	10945393	C-T	Hetero	INTRON
SBS	Chr3	15326626	G-A	Hetero	INTERGENIC
SBS	Chr3	18734844	A-T	Hetero	INTERGENIC
SBS	Chr3	20125941	G-A	Hetero	INTERGENIC
SBS	Chr4	11606488	G-A	Hetero	INTERGENIC
SBS	Chr4	13580515	G-C	Hetero	INTERGENIC
SBS	Chr4	24775229	A-T	Hetero	INTERGENIC
SBS	Chr4	28400229	C-G	Hetero	INTERGENIC
SBS	Chr5	5059844	C-T	Homo	INTERGENIC
SBS	Chr5	9209522	C-T	Hetero	INTERGENIC
SBS	Chr5	18889797	C-T	Hetero	INTERGENIC
SBS	Chr5	23792135	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	4950606	G-A	Hetero	INTERGENIC
SBS	Chr6	9230256	A-C	Homo	INTERGENIC
SBS	Chr6	17848836	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g164300
SBS	Chr6	21031287	T-C	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	2038276	T-A	Hetero	INTERGENIC
SBS	Chr7	15368326	G-C	Hetero	INTERGENIC
SBS	Chr7	17523860	A-T	Hetero	INTERGENIC
SBS	Chr7	25337320	T-C	Hetero	INTERGENIC
SBS	Chr8	2042799	G-A	Hetero	INTERGENIC
SBS	Chr8	7052135	C-T	Hetero	INTERGENIC
SBS	Chr8	7738229	T-C	Homo	INTERGENIC
SBS	Chr8	8705247	T-C	Hetero	INTERGENIC
SBS	Chr8	9687538	C-G	Hetero	INTERGENIC
SBS	Chr8	12772094	G-A	Hetero	INTERGENIC
SBS	Chr8	15547697	G-A	Hetero	INTERGENIC
SBS	Chr8	16170267	A-T	Hetero	INTRON
SBS	Chr9	14689174	A-T	Hetero	INTERGENIC
SBS	Chr10	1504326	G-T	Hetero	INTERGENIC
SBS	Chr10	1963501	G-A	Homo	INTERGENIC
SBS	Chr10	4090505	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	8938716	C-T	Homo	INTERGENIC
SBS	Chr10	12165241	C-T	Hetero	INTERGENIC
SBS	Chr11	4553736	T-C	Hetero	INTRON
SBS	Chr11	7607491	G-A	Homo	INTERGENIC
SBS	Chr11	8607795	C-T	Hetero	INTERGENIC
SBS	Chr11	15726739	C-A	Hetero	INTERGENIC
SBS	Chr12	5509605	C-T	Hetero	INTERGENIC
SBS	Chr12	9524085	A-T	Hetero	INTRON
SBS	Chr12	9720656	G-A	Hetero	INTERGENIC
SBS	Chr12	10666113	G-T	Hetero	INTERGENIC
SBS	Chr12	12204451	C-A	Hetero	INTERGENIC
SBS	Chr12	13968602	C-T	Hetero	INTERGENIC
SBS	Chr12	14449201	T-C	Hetero	INTERGENIC
SBS	Chr12	16868977	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr10	5511258	5511259	1
Deletion	Chr4	6029947	6029951	4	OsKitaake04g030200
Deletion	Chr2	7213019	7213021	2
Deletion	Chr11	8512566	8512569	3
Deletion	Chr10	10299603	10299604	1
Deletion	Chr10	16946003	16946004	1
Deletion	Chr7	19188586	19188588	2
Deletion	Chr1	19205380	19205381	1
Deletion	Chr10	21902613	21902614	1
Deletion	Chr5	23460810	23460817	7
Deletion	Chr5	25854199	25854201	2
Deletion	Chr3	27324099	27324111	12
Deletion	Chr7	28492576	28492577	1
Deletion	Chr3	29477293	29477295	2
Deletion	Chr1	40838896	40838900	4	OsKitaake01g444500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14547461	15147634	OsKitaake11g121200
Inversion	Chr11	14547484	15147638	OsKitaake11g121200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes