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| Mutant Information |
|---|
| Mutant Name | FN821-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN821-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2874714 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 6165774 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g083700 |
| SBS | Chr2 | 7669871 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7748100 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10290725 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g123000 |
| SBS | Chr2 | 20036886 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 24875332 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2639812 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g037600 |
| SBS | Chr3 | 9632764 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29206453 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 36447943 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11670283 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25324838 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 25883674 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29246320 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 6822028 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23534146 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17208959 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25245271 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g197300 |
| SBS | Chr10 | 1217702 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 17740066 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11321347 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15392600 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 29306833 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2267064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14456786 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 14456787 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22991346 | G-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3304930 | 3304947 | 17 | |
| Deletion | Chr8 | 9274012 | 9274013 | 1 | |
| Deletion | Chr7 | 10084514 | 10084519 | 5 | OsKitaake07g099400 |
| Deletion | Chr8 | 10683908 | 10683912 | 4 | |
| Deletion | Chr2 | 34175037 | 34175042 | 5 | |
| Deletion | Chr2 | 34872921 | 34872923 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 5510289 | 5510292 | 2 | |
| Insertion | Chr7 | 22848895 | 22848898 | 2 |