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| Mutant Information |
|---|
| Mutant Name | FN824-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN824-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4173822 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 29676261 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31216001 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 31235089 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 36942587 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 8434589 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 6308882 | G-T | Hetero | START_GAINED | |
| SBS | Chr3 | 36811878 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 10993420 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 13616041 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15379531 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32980620 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 33169222 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 36503110 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 14378213 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22464475 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 11858219 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12662920 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12662921 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 13077542 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 13587976 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18579934 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19199674 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23411229 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 4616410 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 19466526 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9715719 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 16607440 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2281195 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 12960170 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 22281696 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 23164131 | C-T | Homo | INTRON | |
| SBS | Chr11 | 11579000 | C-T | Homo | INTRON | |
| SBS | Chr11 | 11579001 | A-T | Homo | INTRON | |
| SBS | Chr11 | 20380563 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5068827 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13307160 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21147986 | A-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 461001 | 752000 | 290999 | 31 |
| Deletion | Chr7 | 6564691 | 6564701 | 10 | |
| Deletion | Chr8 | 11169463 | 11169465 | 2 | |
| Deletion | Chr10 | 12960180 | 12960183 | 3 | |
| Deletion | Chr3 | 15616871 | 15616885 | 14 | |
| Deletion | Chr2 | 18722210 | 18722212 | 2 | |
| Deletion | Chr2 | 20641564 | 20641576 | 12 | |
| Deletion | Chr8 | 21315792 | 21315799 | 7 | |
| Deletion | Chr10 | 22622268 | 22622269 | 1 | |
| Deletion | Chr2 | 23631072 | 23631079 | 7 | |
| Deletion | Chr4 | 29898245 | 29898246 | 1 | OsKitaake04g229800 |
| Deletion | Chr2 | 35358695 | 35358705 | 10 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 3593814 | 3593817 | 2 | |
| Insertion | Chr3 | 37634025 | 37634028 | 2 | |
| Insertion | Chr7 | 2849863 | 2849866 | 2 | |
| Insertion | Chr8 | 615099 | 615102 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 1147566 | 1148095 | OsKitaake06g013100 |