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Mutant Information

Mutant Name	FN825-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN825-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15905581 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g173100
SBS Chr2 4476466 C-T Hetero INTERGENIC
SBS Chr2 8955344 A-G Homo INTERGENIC
SBS Chr2 21771940 A-G Homo INTERGENIC
SBS Chr2 21771941 A-C Homo INTERGENIC
SBS Chr3 10409311 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g142300
SBS Chr3 19353087 G-A Hetero INTERGENIC
SBS Chr3 21619761 A-T Homo UTR_3_PRIME
SBS Chr3 22247579 C-T Homo INTERGENIC
SBS Chr3 22287975 C-A Homo UTR_3_PRIME
SBS Chr3 22287979 C-A Homo UTR_3_PRIME
SBS Chr5 3602562 C-T Homo INTRON
SBS Chr5 3602571 T-C Homo INTRON
SBS Chr5 10828353 T-A Hetero INTERGENIC
SBS Chr5 15827084 T-A Homo INTERGENIC
SBS Chr6 10885735 C-T Homo INTERGENIC
SBS Chr6 12900545 C-T Homo INTERGENIC
SBS Chr7 2244750 C-A Hetero INTERGENIC
SBS Chr8 1450090 C-T Homo INTERGENIC
SBS Chr8 17124746 A-G Homo INTERGENIC
SBS Chr9 22507321 A-T Homo UTR_3_PRIME
SBS Chr10 1936480 A-G Homo INTERGENIC
SBS Chr10 3933821 G-A Hetero INTERGENIC
SBS Chr10 6345413 A-T Homo INTERGENIC
SBS Chr10 17679988 C-T Hetero INTERGENIC
SBS Chr10 17679989 A-G Hetero INTERGENIC
SBS Chr11 25340095 G-A Hetero INTRON
SBS Chr11 28329780 A-G Hetero INTERGENIC
SBS Chr12 5437046 C-T Homo INTERGENIC
SBS Chr12 12101644 C-T Hetero UTR_5_PRIME
SBS Chr12 21458297 C-T Hetero INTERGENIC
SBS Chr12 22609898 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g177800

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1274056 1274057 1
Deletion Chr1 1380233 1380235 2
Deletion Chr5 3876001 3885000 8999 2
Deletion Chr7 5382795 5382812 17
Deletion Chr9 5558791 5558793 2
Deletion Chr7 6627898 6627899 1
Deletion Chr8 7022605 7022617 12
Deletion Chr7 8053577 8053579 2
Deletion Chr8 9901337 9901339 2
Deletion Chr3 10814615 10814620 5
Deletion Chr7 11549321 11549323 2
Deletion Chr2 11618188 11618190 2
Deletion Chr8 12710874 12710879 5
Deletion Chr11 17489468 17489484 16
Deletion Chr11 19138002 19138003 1
Deletion Chr9 21858275 21858292 17
Deletion Chr3 24502849 24502858 9
Deletion Chr3 32002151 32002161 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 4704732 4704735 2
Insertion Chr3 20050183 20050185 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 919238 1265003 OsKitaake11g015300
Inversion Chr4 6534894 7356392
Inversion Chr4 6637615 7364019

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10109573 Chr8 17801738
Translocation Chr11 10112001 Chr8 17801733

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15905581	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g173100
SBS	Chr2	4476466	C-T	Hetero	INTERGENIC
SBS	Chr2	8955344	A-G	Homo	INTERGENIC
SBS	Chr2	21771940	A-G	Homo	INTERGENIC
SBS	Chr2	21771941	A-C	Homo	INTERGENIC
SBS	Chr3	10409311	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g142300
SBS	Chr3	19353087	G-A	Hetero	INTERGENIC
SBS	Chr3	21619761	A-T	Homo	UTR_3_PRIME
SBS	Chr3	22247579	C-T	Homo	INTERGENIC
SBS	Chr3	22287975	C-A	Homo	UTR_3_PRIME
SBS	Chr3	22287979	C-A	Homo	UTR_3_PRIME
SBS	Chr5	3602562	C-T	Homo	INTRON
SBS	Chr5	3602571	T-C	Homo	INTRON
SBS	Chr5	10828353	T-A	Hetero	INTERGENIC
SBS	Chr5	15827084	T-A	Homo	INTERGENIC
SBS	Chr6	10885735	C-T	Homo	INTERGENIC
SBS	Chr6	12900545	C-T	Homo	INTERGENIC
SBS	Chr7	2244750	C-A	Hetero	INTERGENIC
SBS	Chr8	1450090	C-T	Homo	INTERGENIC
SBS	Chr8	17124746	A-G	Homo	INTERGENIC
SBS	Chr9	22507321	A-T	Homo	UTR_3_PRIME
SBS	Chr10	1936480	A-G	Homo	INTERGENIC
SBS	Chr10	3933821	G-A	Hetero	INTERGENIC
SBS	Chr10	6345413	A-T	Homo	INTERGENIC
SBS	Chr10	17679988	C-T	Hetero	INTERGENIC
SBS	Chr10	17679989	A-G	Hetero	INTERGENIC
SBS	Chr11	25340095	G-A	Hetero	INTRON
SBS	Chr11	28329780	A-G	Hetero	INTERGENIC
SBS	Chr12	5437046	C-T	Homo	INTERGENIC
SBS	Chr12	12101644	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	21458297	C-T	Hetero	INTERGENIC
SBS	Chr12	22609898	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g177800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1274056	1274057	1
Deletion	Chr1	1380233	1380235	2
Deletion	Chr5	3876001	3885000	8999	2
Deletion	Chr7	5382795	5382812	17
Deletion	Chr9	5558791	5558793	2
Deletion	Chr7	6627898	6627899	1
Deletion	Chr8	7022605	7022617	12
Deletion	Chr7	8053577	8053579	2
Deletion	Chr8	9901337	9901339	2
Deletion	Chr3	10814615	10814620	5
Deletion	Chr7	11549321	11549323	2
Deletion	Chr2	11618188	11618190	2
Deletion	Chr8	12710874	12710879	5
Deletion	Chr11	17489468	17489484	16
Deletion	Chr11	19138002	19138003	1
Deletion	Chr9	21858275	21858292	17
Deletion	Chr3	24502849	24502858	9
Deletion	Chr3	32002151	32002161	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	919238	1265003	OsKitaake11g015300
Inversion	Chr4	6534894	7356392
Inversion	Chr4	6637615	7364019

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes