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Mutant Information

Mutant Name	FN830-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN830-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 118115 T-C Homo INTERGENIC
SBS Chr1 7420352 A-G Hetero INTERGENIC
SBS Chr1 12678766 T-C Homo INTERGENIC
SBS Chr2 28636820 G-A Homo INTERGENIC
SBS Chr2 34362905 T-G Homo INTRON
SBS Chr2 35878371 T-C Homo SYNONYMOUS_CODING
SBS Chr3 4815059 T-A Homo INTERGENIC
SBS Chr3 29579729 T-A Hetero INTERGENIC
SBS Chr4 6268445 G-A Hetero INTRON
SBS Chr4 6349187 T-A Hetero INTERGENIC
SBS Chr4 19126260 T-C Homo INTERGENIC
SBS Chr5 28982684 C-A Hetero INTERGENIC
SBS Chr6 29583414 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g275300
SBS Chr7 16478990 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g135500
SBS Chr7 23300994 C-T Homo INTERGENIC
SBS Chr8 10719206 C-T Hetero INTERGENIC
SBS Chr9 2563529 C-T Hetero INTERGENIC
SBS Chr9 17186120 G-T Hetero INTERGENIC
SBS Chr9 17321423 T-A Hetero INTERGENIC
SBS Chr9 17321424 A-T Hetero INTERGENIC
SBS Chr10 13108942 G-A Hetero INTERGENIC
SBS Chr10 23638860 G-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3256132 3256144 12 OsKitaake01g042500
Deletion Chr9 3995546 3995547 1
Deletion Chr9 4258685 4258688 3
Deletion Chr7 4588783 4588787 4
Deletion Chr4 6442830 6442831 1
Deletion Chr12 8231670 8231671 1
Deletion Chr4 8636001 8657000 20999 OsKitaake04g044100
Deletion Chr3 12459986 12459996 10 OsKitaake03g168000
Deletion Chr9 17035827 17035828 1
Deletion Chr3 17491876 17491880 4
Deletion Chr1 20731156 20731160 4
Deletion Chr5 25495001 25542000 46999 7
Deletion Chr5 25550001 25562000 11999 3
Deletion Chr8 27830854 27830869 15
Deletion Chr2 27990960 27990965 5
Deletion Chr8 29005785 29005800 15
Deletion Chr4 31235075 31235084 9
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23330196 23330206 9
Insertion Chr6 16647037 16647040 2
Insertion Chr10 14766032 14766035 2
Insertion Chr11 22088660 22088663 2 OsKitaake11g174400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	118115	T-C	Homo	INTERGENIC
SBS	Chr1	7420352	A-G	Hetero	INTERGENIC
SBS	Chr1	12678766	T-C	Homo	INTERGENIC
SBS	Chr2	28636820	G-A	Homo	INTERGENIC
SBS	Chr2	34362905	T-G	Homo	INTRON
SBS	Chr2	35878371	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr3	4815059	T-A	Homo	INTERGENIC
SBS	Chr3	29579729	T-A	Hetero	INTERGENIC
SBS	Chr4	6268445	G-A	Hetero	INTRON
SBS	Chr4	6349187	T-A	Hetero	INTERGENIC
SBS	Chr4	19126260	T-C	Homo	INTERGENIC
SBS	Chr5	28982684	C-A	Hetero	INTERGENIC
SBS	Chr6	29583414	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g275300
SBS	Chr7	16478990	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g135500
SBS	Chr7	23300994	C-T	Homo	INTERGENIC
SBS	Chr8	10719206	C-T	Hetero	INTERGENIC
SBS	Chr9	2563529	C-T	Hetero	INTERGENIC
SBS	Chr9	17186120	G-T	Hetero	INTERGENIC
SBS	Chr9	17321423	T-A	Hetero	INTERGENIC
SBS	Chr9	17321424	A-T	Hetero	INTERGENIC
SBS	Chr10	13108942	G-A	Hetero	INTERGENIC
SBS	Chr10	23638860	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3256132	3256144	12	OsKitaake01g042500
Deletion	Chr9	3995546	3995547	1
Deletion	Chr9	4258685	4258688	3
Deletion	Chr7	4588783	4588787	4
Deletion	Chr4	6442830	6442831	1
Deletion	Chr12	8231670	8231671	1
Deletion	Chr4	8636001	8657000	20999	OsKitaake04g044100
Deletion	Chr3	12459986	12459996	10	OsKitaake03g168000
Deletion	Chr9	17035827	17035828	1
Deletion	Chr3	17491876	17491880	4
Deletion	Chr1	20731156	20731160	4
Deletion	Chr5	25495001	25542000	46999	7
Deletion	Chr5	25550001	25562000	11999	3
Deletion	Chr8	27830854	27830869	15
Deletion	Chr2	27990960	27990965	5
Deletion	Chr8	29005785	29005800	15
Deletion	Chr4	31235075	31235084	9
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes