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| Mutant Information |
|---|
| Mutant Name | FN831-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN831-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4227449 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 14274717 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 24641050 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29199179 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34634445 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15824800 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18152587 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g180600 |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 18729284 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27825502 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30603961 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 3329056 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18478539 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32262309 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g342301 |
| SBS | Chr4 | 389606 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 2865305 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14166187 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23396259 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 10826751 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16368747 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7765173 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16819637 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 25276 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g000100 |
| SBS | Chr8 | 538102 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20300436 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 1241901 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 8224509 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 28059450 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4238690 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 24258943 | C-A | Homo | STOP_GAINED | OsKitaake12g195200 |
| SBS | Chr12 | 24258944 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g195200 |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 1297928 | 1297939 | 11 | |
| Deletion | Chr12 | 3929001 | 3949000 | 19999 | 3 |
| Deletion | Chr7 | 7801977 | 7801983 | 6 | |
| Deletion | Chr10 | 8686434 | 8686596 | 162 | |
| Deletion | Chr11 | 19355064 | 19355069 | 5 | |
| Deletion | Chr5 | 22262454 | 22262771 | 317 | OsKitaake05g182000 |
| Deletion | Chr6 | 22766623 | 22766626 | 3 | |
| Deletion | Chr11 | 29612001 | 29621000 | 8999 | OsKitaake11g244300 |
| Deletion | Chr11 | 29625001 | 29733000 | 107999 | 15 |
| Deletion | Chr1 | 31023239 | 31023243 | 4 | OsKitaake01g309000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 26662393 | 26662397 | 3 | |
| Insertion | Chr9 | 16941846 | 16941849 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 2277594 | 2312626 | |
| Inversion | Chr3 | 2277600 | 2312631 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 26952588 | Chr11 | 29611827 | 2 |