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Mutant Information

Mutant Name	FN832-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN832-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2475634 A-T Hetero INTERGENIC
SBS Chr1 30504059 C-A Hetero INTERGENIC
SBS Chr2 14523620 G-A Hetero INTERGENIC
SBS Chr2 21771474 C-T Hetero INTERGENIC
SBS Chr2 35951736 G-A Hetero INTERGENIC
SBS Chr3 31537122 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g332250
SBS Chr4 27697328 T-A Homo INTERGENIC
SBS Chr4 28138439 T-C Homo INTERGENIC
SBS Chr5 5056520 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 29621884 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g282500
SBS Chr6 1292191 C-T Hetero INTERGENIC
SBS Chr6 1569405 G-A Homo UTR_3_PRIME
SBS Chr6 22878275 A-T Homo INTERGENIC
SBS Chr6 24990144 A-G Hetero INTERGENIC
SBS Chr7 8489589 A-T Hetero INTERGENIC
SBS Chr7 24463659 C-T Hetero INTERGENIC
SBS Chr8 12549209 G-T Homo INTERGENIC
SBS Chr9 4607498 C-T Hetero INTERGENIC
SBS Chr9 10361596 C-T Homo INTRON
SBS Chr10 10045504 G-C Hetero INTERGENIC
SBS Chr10 20526445 C-T Hetero INTERGENIC
SBS Chr11 632530 G-T Hetero INTERGENIC
SBS Chr11 12602636 C-T Hetero INTERGENIC
SBS Chr11 13974928 C-T Hetero INTRON
SBS Chr12 8440093 G-T Hetero INTERGENIC
SBS Chr12 10704127 G-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 6847941 6847942 1
Deletion Chr3 10270409 10270418 9
Deletion Chr4 10489707 10489709 2
Deletion Chr2 12814623 12814627 4
Deletion Chr4 17446716 17446721 5 OsKitaake04g086500
Deletion Chr10 17464938 17464943 5
Deletion Chr10 17816441 17816455 14 OsKitaake10g123400
Deletion Chr4 19645668 19645680 12
Deletion Chr4 20954001 20983000 28999 4
Deletion Chr11 22335653 22335660 7
Deletion Chr2 22657001 22869000 211999 25
Deletion Chr6 23978113 23978115 2
Deletion Chr6 24603260 24603265 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11501095 11501101 5
Insertion Chr1 23635675 23635678 2
Insertion Chr1 32773484 32773487 2
Insertion Chr2 26437338 26437341 2
Insertion Chr5 24828778 24828781 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2475634	A-T	Hetero	INTERGENIC
SBS	Chr1	30504059	C-A	Hetero	INTERGENIC
SBS	Chr2	14523620	G-A	Hetero	INTERGENIC
SBS	Chr2	21771474	C-T	Hetero	INTERGENIC
SBS	Chr2	35951736	G-A	Hetero	INTERGENIC
SBS	Chr3	31537122	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g332250
SBS	Chr4	27697328	T-A	Homo	INTERGENIC
SBS	Chr4	28138439	T-C	Homo	INTERGENIC
SBS	Chr5	5056520	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29621884	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g282500
SBS	Chr6	1292191	C-T	Hetero	INTERGENIC
SBS	Chr6	1569405	G-A	Homo	UTR_3_PRIME
SBS	Chr6	22878275	A-T	Homo	INTERGENIC
SBS	Chr6	24990144	A-G	Hetero	INTERGENIC
SBS	Chr7	8489589	A-T	Hetero	INTERGENIC
SBS	Chr7	24463659	C-T	Hetero	INTERGENIC
SBS	Chr8	12549209	G-T	Homo	INTERGENIC
SBS	Chr9	4607498	C-T	Hetero	INTERGENIC
SBS	Chr9	10361596	C-T	Homo	INTRON
SBS	Chr10	10045504	G-C	Hetero	INTERGENIC
SBS	Chr10	20526445	C-T	Hetero	INTERGENIC
SBS	Chr11	632530	G-T	Hetero	INTERGENIC
SBS	Chr11	12602636	C-T	Hetero	INTERGENIC
SBS	Chr11	13974928	C-T	Hetero	INTRON
SBS	Chr12	8440093	G-T	Hetero	INTERGENIC
SBS	Chr12	10704127	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	6847941	6847942	1
Deletion	Chr3	10270409	10270418	9
Deletion	Chr4	10489707	10489709	2
Deletion	Chr2	12814623	12814627	4
Deletion	Chr4	17446716	17446721	5	OsKitaake04g086500
Deletion	Chr10	17464938	17464943	5
Deletion	Chr10	17816441	17816455	14	OsKitaake10g123400
Deletion	Chr4	19645668	19645680	12
Deletion	Chr4	20954001	20983000	28999	4
Deletion	Chr11	22335653	22335660	7
Deletion	Chr2	22657001	22869000	211999	25
Deletion	Chr6	23978113	23978115	2
Deletion	Chr6	24603260	24603265	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes